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Report for CCDS19425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19425.1 Public Mus musculus 5 Cdkl2 23 108 98 CCDS HistoryNCBI Gene:53886Re-query CCDS DB by CCDS ID:19425.1Re-query CCDS DB by GeneID:53886See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069937.10 ENSMUSP00000063617.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069937.10Link to Ensembl Protein Viewer:ENSMUSP00000063617.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069937Re-query CCDS DB by Protein ID:ENSMUSP00000063617
Original member Current member EBI ENSMUST00000113143.7 ENSMUSP00000108768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113143.7Link to Ensembl Protein Viewer:ENSMUSP00000108768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113143Re-query CCDS DB by Protein ID:ENSMUSP00000108768
Original member Current member NCBI NM_001276315.1 NP_001263244.1 Accepted alive Link to Nucleotide Sequence:NM_001276315.1Link to Protein Sequence:NP_001263244.1Re-query CCDS DB by Nucleotide ID:NM_001276315Re-query CCDS DB by Protein ID:NP_001263244Link to BLAST:NP_001263244.1
Original member Current member NCBI NM_177270.4 NP_796244.2 Accepted alive Link to Nucleotide Sequence:NM_177270.4Link to Protein Sequence:NP_796244.2Re-query CCDS DB by Nucleotide ID:NM_177270Re-query CCDS DB by Protein ID:NP_796244Link to BLAST:NP_796244.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263244.1 564 Q9QUK0-2 564 100% 0 0
NP_796244.2 564 Q9QUK0-2 564 100% 0 0

Chromosomal Locations for CCDS 19425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92008081 92008134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92017122 92017228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92017382 92017505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92019379 92019472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92020018 92020313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92022103 92022232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92024936 92025024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92030983 92031128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92033124 92033236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92033579 92033757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92037168 92037362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92039238 92039405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGAGAAGTACGAGAACCTAGGATTGGTTGGAGAGGGGAGTTACGGAATGGTGATGAAGTGTAGGAACA
AAGACAGTGGAAGAATTGTGGCCATTAAGAAGTTCCTAGAAAGTGACGATGATAAAATGGTTAAGAAGAT
CGCAATGCGAGAGATCAAGTTACTAAAGCAACTGCGGCATGAAAATTTGGTGAATCTGTTGGAAGTATGT
AAGAAAAAAAAACGTTGGTACCTAGTCTTTGAATTTGTTGACCACACGATTCTTGATGACTTGAAACTCT
TTCCAAATGGACTAGACTATCAAGTAGTTCAAAAATATTTGTTTCAGATTATTAATGGAATTGGATTTTG
CCACAGTCACAATATCATACACAGAGATATAAAGCCTGAGAATATATTAGTCTCCCAGTCTGGCGTTGTA
AAATTATGTGACTTTGGATTTGCACGGACCCTGGCGGCTCCAGGGGAGGTTTACACTGACTATGTGGCCA
CCCGGTGGTACAGAGCTCCAGAACTGCTGGTCGGTGACGTCAAGTATGGCAAGGCTGTGGATATCTGGGC
CATTGGTTGTCTGGTCATTGAAATGCTTATGGGGCAGCCACTGTTTCCAGGAGAATCTGATATTGATCAG
CTACATCATATTATGACATGTTTAGGTAATTTAATTCCAAGACACCAGGAGCTATTTTATAAAAATCCTG
TGTTTGCTGGAGTAAGGTTGCCTGAGGTCAAAGATGCAGAAGCAGAGCCTCTTGAGAGCCGCTATCCTAA
GCTCCCTGAAGCTGTGATCAGTTTAGCAAAGAAATGCTTGCACATTGACCCAGACAAAAGGCCCTTCTGT
GCTGACCTTCTGCGCCATGACTTCTTTCAAATGGATGGATTTGCTGAGAGGTTTTCTCAAGAATTGCAGT
TAAAAATAGAGAAAGATGCCAGGAATAATTCTTTACCTAAAAAGTCTCAAAACAGAAAGAAAGAAAAAGA
CGATGCCTTAGGTGAAGAAAGAAAAACCCTTGTGGTACAGGATACCAATGCTGACCCCAAAATTAAGGAT
TCAAAAGTATTTAAAGTAAAGGGGTCAAAAATTGATGTTGAGAAAATGGAAAAAGGAAGTAGAGCTTCAA
ATGCCAACTGTCTCCATGACAATGGGACAAACCACAAAGGCTTGGCTTCCACCAGCCTCAGAGATTGCAG
CAATGTCAACATTGATCACTCAAGGAACCCAGGCACAGCGATTCCTCCCCTCACACACAATCTTTCTGCA
GTTGCTCCTGGCATTAATGCTGGAATGGGGACTATTCCTGGCGTTCAGAATTACAGAGTGGATGAGAAAA
CAAAGAAATACTGTAATCCATTTGTTAAACCAAATCAGCCTCCTCCAGCAGGGATTTATAATATGAATGT
GAGCACATCCGTCTCAGGTGAAAAGTACCTCCTTCAGGCAAACAAGAAAAGGAAGGAATATCCCAAAGCA
GACGTGCGGTTGCCTGAACTAAACTATAACCATCTTCCTGAACTGAGAGCTTTAGAAGGCATAGCTCGAA
ATTCTAGGCTAATAAAGAAAGAGAACAAATGCCTTTCAGAATCTCGAATTCCCTCTCTGGCTGCCATTGA
TCTGCACGTGTCCAGTGTTGCATCACACCAGATGCTGCCAGCCCTGGAGATGACGTCCTCTTGCACGAGA
GCACTGATACCCTAG

Translation (564 aa):
MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC
KKKKRWYLVFEFVDHTILDDLKLFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVV
KLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDIWAIGCLVIEMLMGQPLFPGESDIDQ
LHHIMTCLGNLIPRHQELFYKNPVFAGVRLPEVKDAEAEPLESRYPKLPEAVISLAKKCLHIDPDKRPFC
ADLLRHDFFQMDGFAERFSQELQLKIEKDARNNSLPKKSQNRKKEKDDALGEERKTLVVQDTNADPKIKD
SKVFKVKGSKIDVEKMEKGSRASNANCLHDNGTNHKGLASTSLRDCSNVNIDHSRNPGTAIPPLTHNLSA
VAPGINAGMGTIPGVQNYRVDEKTKKYCNPFVKPNQPPPAGIYNMNVSTSVSGEKYLLQANKKRKEYPKA
DVRLPELNYNHLPELRALEGIARNSRLIKKENKCLSESRIPSLAAIDLHVSSVASHQMLPALEMTSSCTR
ALIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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