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Report for CCDS19553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19553.1 Public Mus musculus 5 Iscu 23 108 98 CCDS HistoryNCBI Gene:66383Re-query CCDS DB by CCDS ID:19553.1Re-query CCDS DB by GeneID:66383See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026937.11 ENSMUSP00000026937.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026937.11Link to Ensembl Protein Viewer:ENSMUSP00000026937.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026937Re-query CCDS DB by Protein ID:ENSMUSP00000026937
Original member Current member NCBI NM_025526.5 NP_079802.1 Accepted alive Link to Nucleotide Sequence:NM_025526.5Link to Protein Sequence:NP_079802.1Re-query CCDS DB by Nucleotide ID:NM_025526Re-query CCDS DB by Protein ID:NP_079802Link to BLAST:NP_079802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079802.1 168 Q9D7P6 168 100% 0 0

Chromosomal Locations for CCDS 19553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113772828 113772944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113774263 113774376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113775218 113775328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113776771 113776849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113777833 113777918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCGGCGGCCACGGGAGCTGGCCGTCTGAGGCGGGCGGCGTCGGCGCTGCTGCTGCGGAGCCCGCGCC
TGCCCGCCCGGGAGCTGTCGGCTCCGGCCAGGCTCTACCACAAGAAGGTTGTGGATCATTATGAAAACCC
TCGGAACGTGGGATCCCTTGACAAGACATCTAAAAATGTTGGAACCGGATTGGTGGGGGCTCCGGCATGT
GGTGACGTCATGAAACTGCAGATCCAGGTGGATGAAAAGGGGAAGATTGTGGACGCCAGATTCAAAACAT
TTGGCTGCGGCTCCGCCATTGCCTCCAGCTCCTTAGCCACAGAGTGGGTAAAGGGGAAAACGGTGGAGGA
AGCCCTGACCATCAAAAACACCGACATCGCCAAGGAGCTCTGCCTGCCGCCTGTGAAACTGCACTGCTCC
ATGCTGGCAGAAGACGCCATCAAGGCCGCCCTGGCTGACTACAAACTGAAGCAAGAGTCCAAGAAGGAGG
AGCCAGAGAAGCAGTGA

Translation (168 aa):
MAAATGAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPAC
GDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCS
MLAEDAIKAALADYKLKQESKKEEPEKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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