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Report for CCDS19632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19632.1 Public Mus musculus 5 Rpl6 23 108 98 CCDS HistoryNCBI Gene:19988Re-query CCDS DB by CCDS ID:19632.1Re-query CCDS DB by GeneID:19988See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031617.12 ENSMUSP00000031617.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031617.12Link to Ensembl Protein Viewer:ENSMUSP00000031617.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031617Re-query CCDS DB by Protein ID:ENSMUSP00000031617
Original member Current member NCBI NM_011290.5 NP_035420.2 Accepted alive Link to Nucleotide Sequence:NM_011290.5Link to Protein Sequence:NP_035420.2Re-query CCDS DB by Nucleotide ID:NM_011290Re-query CCDS DB by Protein ID:NP_035420Link to BLAST:NP_035420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035420.2 296 P47911 296 100% 0 0

Chromosomal Locations for CCDS 19632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121205406 121205663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121205754 121205855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121206667 121206810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121207147 121207195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121208391 121208575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121208782 121208934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCGGGTGAAAAAGCGCCTGATACAAAGGAGAAGAAACCTGCGGCCAAGAAGGCTGGCAGTGATGCTG
CTGCCTCCCGGCCCCGGGCCGCCAAAGTAGCCAAAAAGGTTCACCCTAAGGGTAAAAAGCCCAAGAAGGC
GAAGCCCCATTGCAGCCGAAACCCTGTCCTGGTGAGAGGAATTGGCAGGTACTCCCGATCTGCTATGTAC
TCCAGGAAGGCCTTGTACAAAAGGAAATACTCGGCTGCCAAGACCAAGGTTGAGAAGAAGAAGAAAAAAG
AGAAGGTCCTTGCTACTGTCACCAAAACAGTTGGTGGGGACAAGAACGGTGGCACCCGGGTGGTGAAGCT
TCGAAAAATGCCTAGGTATTATCCCACCGAAGATGTTCCTCGGAAGCTGCTGAGCCACGGCAAGAAGCCC
TTCAGCCAGCACGTGAGAAGGCTACGCTCCAGCATCACTCCCGGAACTGTCCTGATCATCCTCACTGGGC
GCCACAGGGGCAAGAGAGTGGTTTTCCTGAAGCAGCTGGACAGTGGCTTGCTGCTTGTGACTGGGCCTCT
TGTCATCAACAGAGTTCCTCTGCGCAGAACACACCAGAAGTTTGTCATTGCCACCTCTACAAAAGTTGAT
ATCAGCGATGTTAAAATCCCCAAACACCTGACTGACGCTTACTTCAAGAAGAAGCAGCTGCGCAAGCCCA
GGCATCAGGAGGGCGAGATCTTCGACACAGAGAAGGAGAAATACGAGATTACAGAGCAGCGAAAGGCTGA
CCAGAAAGCTGTGGATTTGCAGATTTTGCCAAAGATTAAAGCTGTTCCTCAGCTCCAGGGCTACCTGCGC
TCTCAGTTTTCCCTGACAAACGGGATGTATCCTCACAAACTGGTCTTCTAA

Translation (296 aa):
MAGEKAPDTKEKKPAAKKAGSDAAASRPRAAKVAKKVHPKGKKPKKAKPHCSRNPVLVRGIGRYSRSAMY
SRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKP
FSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVD
ISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLR
SQFSLTNGMYPHKLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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