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Report for CCDS19640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19640.1 Public Mus musculus 5 Brap 23 108 98 CCDS HistoryNCBI Gene:72399Re-query CCDS DB by CCDS ID:19640.1Re-query CCDS DB by GeneID:72399See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031414.14 ENSMUSP00000031414.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031414.14Link to Ensembl Protein Viewer:ENSMUSP00000031414.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031414Re-query CCDS DB by Protein ID:ENSMUSP00000031414
Original member Current member NCBI NM_028227.3 NP_082503.2 Accepted alive Link to Nucleotide Sequence:NM_028227.3Link to Protein Sequence:NP_082503.2Re-query CCDS DB by Nucleotide ID:NM_028227Re-query CCDS DB by Protein ID:NP_082503Link to BLAST:NP_082503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082503.2 591 Q99MP8-1 591 100% 0 0

Chromosomal Locations for CCDS 19640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121660767 121660848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121662000 121662161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121663296 121663491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121665099 121665288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121672085 121672198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121675230 121675378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121678764 121678839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121679211 121679349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121679817 121679926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121682780 121682869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121684371 121684474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121685129 121685492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGAGTGTGTCACTGGTGGTCATCCGACTGGAGCTCGCGGGTCACTCGCCGGTCCCCACCGACTTCGGCT
TCAGCGCCGCCGCTGGAGAGATGTCTGATGAGGAGATCAAAAAGAAGACATTGGCTTCCGCTGTCGCCTG
TCTAGAAGGGAAGTCAGCCGGGGAGAAAGCAGCCATCATCCACCAGCACCTTGGCCGTCGGGAAATGACG
GATGTGATTATTGAGACCATGAAGGCCAGAGCAGATGAAGTGAGAGACACAGTGGAAGAAAAGAAGCCTT
CAGCAGCCCCTGTCTCTGCACAGAGAAGTAGAGAACAGAGTGAGTCTGTGAACACAGCCCCAGAGTCTCC
ATCCAAACAGCTCCCAGACCAGATTTCCTTCTTCAGTGGCAACCCTTCTGTTGAAATAGTCCACGGCATT
ATGCACCTGTACAAGACAAATAAGATGACCTCCCTAAAAGAAGACGTTCGGCGCAGTGCCATGCTGTGTG
TCCTCACCGTCCCTGCCACCATGACCAGTCATGACCTTATGAAGTTTGTTGCCCCATTCAATGATGTAAT
TGAACAAATGAAAATCATCAGGGACTCTACTCCGAATCAGTACATGGTACTGATCAAGTTCAGTGCGCAG
GCTGATGCAGACAGTTTCTACATGGCGTGCAATGGCCGCCAGTTCAACTCAATCGAAGATGACGTCTGCC
AGCTGGTCTATGTGGAAAGGGCTGAAGTGCTGAAATCTGAAGATGGCGCCAGCCTCCCCGTGATGGACCT
GACGGAGCTGCCCAAGTGCACTGTGTGTCTGGAGCGGATGGACGAGTCTGTGAATGGCATCCTCACCACC
CTCTGCAACCACAGCTTCCATAGTCAGTGTCTGCAGCGGTGGGATGACACCACGTGTCCTGTGTGCCGAT
ACTGTCAAACGCCAGAGCCAGTGGAAGAAAACAAATGTTTTGAGTGTGGTGTCCAGGAAAACCTCTGGAT
TTGTTTAATATGCGGCCACATAGGCTGTGGGCGGTACGTGAGTCGGCATGCTTACAAGCACTTTGAGGAG
ACCCAGCACACATACGCCATGCAGCTCACCAACCATCGAGTCTGGGACTATGCTGGAGATAATTATGTCC
ATCGACTGGTTGCAAGCAAGACGGATGGAAAGATCGTTCAGTACGAGTGTGAGGGCGACACCTGCCAGGA
AGAGAAGATAGATGCCTTACAGTTAGAGTACTCGTACCTGTTGACAAGCCAGCTGGAATCGCAGCGGATA
TACTGGGAGAACAAAATCGTGCGCATAGAGAAGGACACGGCAGAGGAGATTAACAACATGAAGACCAAGT
TTAAAGAGACCATCGAGAAGTGTGACAGCCTGGAGCTCAGGCTCAGTGACCTCCTGAAGGAGAAGCAGTC
TGTGGAAAGGAAGTGTACCCAGCTGAACACCAGAGTGGCCAAGCTCAGCACGGAGCTGCAGGAGGAGCAG
GAGCTGAACAAGTGTCTGCGCGCCAACCAGCTGGTGCTGCAGAACCAGCTCAAGGAGGAGGAGAAGCTGC
TGAAGGAGACCTGTGCCCAGAAAGACCTGCAGATCACCGAGATCCAGGAGCAGCTGCGCGATGTCATGTT
CTACCTGGAGACACAGCAGCAGATCAGCCACCTGCCTGCGGAGACGAGGCAGGAGATCCAGGAAGGCCAG
ATCAACATCGCCATGGCCTCAGCGCCCAACCCACCCTCTTCCGGGGCCGGTGGGAAGCTGCAGTCCAGAA
AGGGCCGCAGCAAGAGGGGCAAGTGA

Translation (591 aa):
MSVSLVVIRLELAGHSPVPTDFGFSAAAGEMSDEEIKKKTLASAVACLEGKSAGEKAAIIHQHLGRREMT
DVIIETMKARADEVRDTVEEKKPSAAPVSAQRSREQSESVNTAPESPSKQLPDQISFFSGNPSVEIVHGI
MHLYKTNKMTSLKEDVRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQMKIIRDSTPNQYMVLIKFSAQ
ADADSFYMACNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTT
LCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEE
TQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRI
YWENKIVRIEKDTAEEINNMKTKFKETIEKCDSLELRLSDLLKEKQSVERKCTQLNTRVAKLSTELQEEQ
ELNKCLRANQLVLQNQLKEEEKLLKETCAQKDLQITEIQEQLRDVMFYLETQQQISHLPAETRQEIQEGQ
INIAMASAPNPPSSGAGGKLQSRKGRSKRGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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