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Report for CCDS19668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19668.1 Public Mus musculus 5 Hcar2 23 108 98 CCDS HistoryNCBI Gene:80885Re-query CCDS DB by CCDS ID:19668.1Re-query CCDS DB by GeneID:80885See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057145.6 ENSMUSP00000054104.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057145.6Link to Ensembl Protein Viewer:ENSMUSP00000054104.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057145Re-query CCDS DB by Protein ID:ENSMUSP00000054104
Original member Current member NCBI NM_030701.3 NP_109626.1 Accepted alive Link to Nucleotide Sequence:NM_030701.3Link to Protein Sequence:NP_109626.1Re-query CCDS DB by Nucleotide ID:NM_030701Re-query CCDS DB by Protein ID:NP_109626Link to BLAST:NP_109626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109626.1 360 Q9EP66 360 100% 0 0

Chromosomal Locations for CCDS 19668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123864356 123865438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGAGCAAGTCAGACCATTTTCTAGTGATAAACGGCAAGAACTGCTGTGTGTTCCGAGATGAAAACATCG
CCAAGGTCTTGCCACCGGTGTTGGGGCTGGAATTTGTGTTCGGACTCCTGGGCAATGGCCTTGCCTTGTG
GATTTTCTGTTTCCACCTCAAGTCCTGGAAATCCAGCCGGATTTTCTTGTTCAACTTGGCCGTGGCTGAC
TTTCTCCTGATCATCTGCCTGCCGTTCCTGACGGACAACTATGTCCATAACTGGGACTGGAGGTTCGGAG
GCATCCCCTGCCGTGTGATGCTCTTCATGTTGGCTATGAACCGACAGGGCAGCATCATCTTCCTCACCGT
GGTGGCTGTGGACCGCTACTTCCGGGTGGTCCATCCACACCACTTCTTGAACAAGATCTCCAACCGGACG
GCGGCCATCATTTCTTGCTTCTTGTGGGGTCTCACCATCGGCCTGACTGTCCACCTCCTCTATACAAACA
TGATGACCAAAAATGGCGAGGCATATCTGTGTAGCAGCTTCAGCATCTGTTACAACTTCAGGTGGCACGA
TGCTATGTTCCTCTTGGAATTCTTCTTGCCCCTGGCCATCATCTTGTTCTGCTCAGGCAGGATCATCTGG
AGCCTGAGGCAGAGACAGATGGACAGACATGCCAAGATCAAGAGGGCCATCAACTTCATCATGGTGGTGG
CTATTGTATTCATCATTTGCTTCCTACCCAGTGTGGCTGTGCGCATCCGCATCTTCTGGCTTCTCTACAA
ATATAACGTACGCAACTGTGACATCTACTCCTCGGTGGACCTGGCTTTCTTTACCACCCTTAGCTTTACC
TACATGAACAGCATGCTGGACCCTGTGGTCTACTATTTCTCCAGCCCATCTTTCCCCAACTTCTTCTCCA
CGTGTATCAACCGCTGCCTTCGAAAGAAAACATTGGGTGAACCCGATAATAACCGAAGCACTAGTGTGGA
GCTCACGGGGGACCCCAGCACAACCAGAAGTATTCCAGGGGCGCTAATGGCTGACCCCAGTGAGCCAGGC
AGCCCCCCTTATCTGGCTTCCACATCTCGTTAA

Translation (360 aa):
MSKSDHFLVINGKNCCVFRDENIAKVLPPVLGLEFVFGLLGNGLALWIFCFHLKSWKSSRIFLFNLAVAD
FLLIICLPFLTDNYVHNWDWRFGGIPCRVMLFMLAMNRQGSIIFLTVVAVDRYFRVVHPHHFLNKISNRT
AAIISCFLWGLTIGLTVHLLYTNMMTKNGEAYLCSSFSICYNFRWHDAMFLLEFFLPLAIILFCSGRIIW
SLRQRQMDRHAKIKRAINFIMVVAIVFIICFLPSVAVRIRIFWLLYKYNVRNCDIYSSVDLAFFTTLSFT
YMNSMLDPVVYYFSSPSFPNFFSTCINRCLRKKTLGEPDNNRSTSVELTGDPSTTRSIPGALMADPSEPG
SPPYLASTSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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