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Report for CCDS19717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19717.1 Public Mus musculus 5 Castor2 23 108 98 CCDS HistoryNCBI Gene:80909Re-query CCDS DB by CCDS ID:19717.1Re-query CCDS DB by GeneID:80909See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016088.8 ENSMUSP00000016088.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016088.8Link to Ensembl Protein Viewer:ENSMUSP00000016088.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000016088Re-query CCDS DB by Protein ID:ENSMUSP00000016088
Original member Current member NCBI NM_030719.3 NP_109644.2 Accepted alive Link to Nucleotide Sequence:NM_030719.3Link to Protein Sequence:NP_109644.2Re-query CCDS DB by Nucleotide ID:NM_030719Re-query CCDS DB by Protein ID:NP_109644Link to BLAST:NP_109644.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109644.2 329 Q8CAB8 329 100% 0 0

Chromosomal Locations for CCDS 19717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134100039 134100151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134125872 134125942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134135151 134135344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134135580 134135712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134136105 134136228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134137050 134137160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134137464 134137546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134138036 134138130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134138229 134138294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAACTGCACATTCTGGAACACCGGCTGCAAGTTGCCAGCGTCGCCAAGGAGAGTATCCCGCTCTTCA
CCTACGGCCTCATCAAACTTGCCTTCCTGTCTTCCAAGACCAGGTGCAAGTTTTTCAGTCTGACCGAGAC
CCCTGAGGACTACACCATCATCGTAGATGAGGAGGGTTTCCTTGAGCTACCCTCCTCAGAGCACCTGAGT
GTGGCTGATGCCACCTGGCTGGCCCTGAACGTGGTGTCCGGTGGCGGCAGCTTCTCCAGCTCCCAGCCCA
TCGGTGTGACAAAGATTGCCAAGTCTGTCATTGCCCCACTCGCCGACCAGAACATCTCCGTGTTTATGCT
GTCCACCTATCAAACTGACTTCATCCTGGTGCGGGAGCGGGACCTGCCCTTCGTCACTCACACCTTGTCC
TCGGAGTTCACCATCCTACGCGTTGTCAATGGAGAAACGGTGGCGGCTGAGAATCTCAGCTTCACCAATG
GCTTTGTGAAGCCCAAGATGGTCCAGAGGCCAGTCATCCACCCACTGTCTAGCCCAAGCAACAGGTTCTG
TGTCACCAGCCTGGACCCTGACACACTGCCCGCCGTCGCCACCCTTCTCATGGATGTGATGTTCTACTCC
AATGGAGTGAAGGACCCCATGGCTGCCAGTGACGATTGTGGCCACATCCGCTTCTTCTCCTTCTCACTCA
TTGAGGGCTACATCTCACTGGTGATGGACGTACAGACCCAGCAGAGGTTCCCGAGTCACTTGCTATTCAC
GAGTGCATCTGGAGAGCTCTGGAAGATGGTGCGCATAGGAGGACAACCCTTGGGATTTGATGAATGTGGG
ATTGTAGCCCAGATCTCAGAGCCCTTGGCAGCTGCAGACATCCCAGCATATTACATCAGTACTTTCAAGT
TCGACCATGCATTGGTTCCAGAAGAGAATATCAGTGGGGTTATCCATGCCCTGAAGGTCAGTCAAGCAGG
GAAGCATTAG

Translation (329 aa):
MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLS
VADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLS
SEFTILRVVNGETVAAENLSFTNGFVKPKMVQRPVIHPLSSPSNRFCVTSLDPDTLPAVATLLMDVMFYS
NGVKDPMAASDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSHLLFTSASGELWKMVRIGGQPLGFDECG
IVAQISEPLAAADIPAYYISTFKFDHALVPEENISGVIHALKVSQAGKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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