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Report for CCDS19742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19742.1 Public Mus musculus 5 Ccl24 23 108 98 CCDS HistoryNCBI Gene:56221Re-query CCDS DB by CCDS ID:19742.1Re-query CCDS DB by GeneID:56221See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004936.9 ENSMUSP00000004936.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004936.9Link to Ensembl Protein Viewer:ENSMUSP00000004936.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004936Re-query CCDS DB by Protein ID:ENSMUSP00000004936
Original member Current member EBI ENSMUST00000201401.1 ENSMUSP00000144002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201401.1Link to Ensembl Protein Viewer:ENSMUSP00000144002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201401Re-query CCDS DB by Protein ID:ENSMUSP00000144002
Original member Current member NCBI NM_001356630.1 NP_001343559.1 Accepted alive Link to Nucleotide Sequence:NM_001356630.1Link to Protein Sequence:NP_001343559.1Re-query CCDS DB by Nucleotide ID:NM_001356630Re-query CCDS DB by Protein ID:NP_001343559Link to BLAST:NP_001343559.1
Original member Current member NCBI NM_019577.5 NP_062523.1 Accepted alive Link to Nucleotide Sequence:NM_019577.5Link to Protein Sequence:NP_062523.1Re-query CCDS DB by Nucleotide ID:NM_019577Re-query CCDS DB by Protein ID:NP_062523Link to BLAST:NP_062523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343559.1 119 Q9JKC0 119 100% 0 0
NP_062523.1 119 Q9JKC0 119 100% 0 0

Chromosomal Locations for CCDS 19742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135570795 135570963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135572576 135572693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135572900 135572972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGCGGGCTCTGCTACGATCGTTGCCGGCCTCCTTCTCCTGGTAGCCTGCGCGTGTTGCATCTTCCCCA
TAGATTCTGTGACCATCCCCTCATCTTGCTGCACGTCCTTTATTTCCAAGAAAATTCCAGAAAACCGAGT
GGTTAGCTACCAGTTGGCCAACGGCAGCATCTGTCCCAAGGCAGGGGTCATCTTCATCACCAAGAAGGGC
CATAAGATCTGTACTGACCCCAAGCTGCTGTGGGTTCAGAGGCACATACAAAAACTGGATGCCAAGAAAA
ACCAGCCTTCTAAAGGGGCCAAGGCAGTGAGAACCAAGTTTGCTGTCCAGAGACGCCGTGGCAATAGCAC
CGAGGTTTAG

Translation (119 aa):
MAGSATIVAGLLLLVACACCIFPIDSVTIPSSCCTSFISKKIPENRVVSYQLANGSICPKAGVIFITKKG
HKICTDPKLLWVQRHIQKLDAKKNQPSKGAKAVRTKFAVQRRRGNSTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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