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Report for CCDS1979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1979.1 Public Homo sapiens 2 VAMP8 24 110 108 CCDS HistoryNCBI Gene:8673Re-query CCDS DB by CCDS ID:1979.1Re-query CCDS DB by GeneID:8673See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263864.10 ENSP00000263864.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263864.10Link to Ensembl Protein Viewer:ENSP00000263864.5Re-query CCDS DB by Nucleotide ID:ENST00000263864Re-query CCDS DB by Protein ID:ENSP00000263864
Original member Current member NCBI NM_003761.5 NP_003752.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003761.5Link to Protein Sequence:NP_003752.2Re-query CCDS DB by Nucleotide ID:NM_003761Re-query CCDS DB by Protein ID:NP_003752Link to BLAST:NP_003752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003752.2 100 Q9BV40 100 100% 0 0

Chromosomal Locations for CCDS 1979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85577647 85577649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85579009 85579167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85581576 85581716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (303 nt):
ATGGAGGAAGCCAGTGAAGGTGGAGGAAATGATCGTGTGCGGAACCTGCAAAGTGAGGTGGAGGGAGTTA
AGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAA
GACAGAGGATCTGGAAGCCACATCTGAGCACTTCAAGACGACATCGCAGAAGGTGGCTCGAAAATTCTGG
TGGAAGAACGTGAAGATGATTGTCCTTATCTGCGTGATTGTTTTTATCATCATCCTCTTCATTGTGCTCT
TTGCCACTGGTGCCTTCTCTTAA

Translation (100 aa):
MEEASEGGGNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFW
WKNVKMIVLICVIVFIIILFIVLFATGAFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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