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Report for CCDS19794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19794.1 Public Mus musculus 5 Ap4m1 23 108 98 CCDS HistoryNCBI Gene:11781Re-query CCDS DB by CCDS ID:19794.1Re-query CCDS DB by GeneID:11781See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019662.10 ENSMUSP00000019662.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019662.10Link to Ensembl Protein Viewer:ENSMUSP00000019662.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019662Re-query CCDS DB by Protein ID:ENSMUSP00000019662
Original member Current member NCBI NM_021392.4 NP_067367.3 Accepted alive Link to Nucleotide Sequence:NM_021392.4Link to Protein Sequence:NP_067367.3Re-query CCDS DB by Nucleotide ID:NM_021392Re-query CCDS DB by Protein ID:NP_067367Link to BLAST:NP_067367.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067367.3 449 Q9JKC7 449 100% 0 0

Chromosomal Locations for CCDS 19794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138172191 138172248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138172349 138172437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138172787 138172893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138172972 138173068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138174750 138174860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138174944 138175024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138175912 138175974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138176052 138176118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138176210 138176263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138176612 138176718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138176817 138176911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138177156 138177200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138177923 138177973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138178069 138178180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138178277 138178489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGATTTCCCAGTTCTTCATTCTGTCTTCCAAGGGGGATCCGCTCATCTATAAAGACTTCCGCGGGGACA
GTGGTGGTCGTGATGTGGCAGAGCTCTTCTACCGGAAGCTGACGGGACTGCCTGGAGGCGAGTCCCCGGT
TGTCATGTATCACGGTGATCGTCATTTTATTCACATCAGACACAGTGGGCTCTATTTGGTGGCCACAACC
TTAGAAAACGTCTCTCCTTTCAGCCTTCTGGAGCTGCTTTCCCGGCTAGCCACTCTCTTGGGTGACTACT
GTGGCTCACTCAATGAGGGAACCATCTCACGCAATGTGGCGCTTGTCTACGAACTCCTGGATGAAGTGCT
GGATTATGGCTATGTGCAGACTACATCCACAGAAATGCTGAGGAACTTCATCCAAACTGAAGCTGTGGTC
AGCAAGCCCTTCAGCCTCTTTGACCTCAGCAGTGTTGGATTGTTCGGGGCAGAGACACAGCAGAATAAAG
TGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAGAGCCAAAAGAATGAGGT
GTTTTTGGATGTGGTGGAGAGACTGTCTGTACTGATTGCATCTAATGGCTCGTTGTTGAAGGTGGACGTC
CAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGATATGCATTGGCTTGACAGAAGAAT
TTTGTGTTGGAAAGTCAGAACTGAGAGGTTATGGGCCAGGGATTCGAGTTGATGAGGTGTCATTCCATAG
TTCTGTCAATCTAGATGAGTTTGAGTCTCATCGGATCCTCCGCCTGCAGCCACCTCAGGGCGAGCTGACT
GTGATGAGATACCAGCTCTCTGATGACCTCCCCTCACCACTCCCCTTCCGGCTCTTTCCCTCTGTGCAGT
GGGACCAAGGCTCAGGCCGGCTCCAGGTTTACCTGAAGTTACGGTGTGACCTGCCCCCAAAGAGCCAAGC
TCTCAACATTCATCTGCACCTTCCCCTGCCCCGAGGGGTCATCAGCCTGTCTCAGGAACTGAGCAGTCCA
GATCAGAAGGCAGAGCTGGGAGAAGGAGCCCTTCACTGGGATCTGCCCCGGGTACAAGGAGGCTCTCAAC
TCTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGG
GCTGGGTCCTGCCAGCCTCTCCTTTGAACTCCCTCGGCACACATGCTCCGGTCTCCAGGTTCGATTCCTC
AGACTGTCCTTTAGTGCCTGTGGTAATGCCAATCCTCACAAGTGGGTTCGACATCTAAGCCACAGCAACG
CCTACGTAATTCGGATTTGA

Translation (449 aa):
MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIRHSGLYLVATT
LENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYGYVQTTSTEMLRNFIQTEAVV
SKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDV
QGEIRLKSFLPSGSEICIGLTEEFCVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELT
VMRYQLSDDLPSPLPFRLFPSVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPRGVISLSQELSSP
DQKAELGEGALHWDLPRVQGGSQLSGLFQMDVPGLQGLPNHGPSPLGLGPASLSFELPRHTCSGLQVRFL
RLSFSACGNANPHKWVRHLSHSNAYVIRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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