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Report for CCDS19819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19819.1 Public Mus musculus 5 Eif3b 23 108 98 CCDS HistoryNCBI Gene:27979Re-query CCDS DB by CCDS ID:19819.1Re-query CCDS DB by GeneID:27979See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100507.7 ENSMUSP00000098076.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100507.7Link to Ensembl Protein Viewer:ENSMUSP00000098076.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100507Re-query CCDS DB by Protein ID:ENSMUSP00000098076
Original member Current member NCBI NM_133916.2 NP_598677.1 Accepted alive Link to Nucleotide Sequence:NM_133916.2Link to Protein Sequence:NP_598677.1Re-query CCDS DB by Nucleotide ID:NM_133916Re-query CCDS DB by Protein ID:NP_598677Link to BLAST:NP_598677.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598677.1 803 Q8JZQ9 803 100% 0 0

Chromosomal Locations for CCDS 19819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140419361 140419826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140425262 140425454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140426437 140426556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140426783 140426840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140427017 140427145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140427410 140427567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140430052 140430183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140430262 140430328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140430971 140431017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140432924 140433134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140436248 140436320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140437285 140437407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140438316 140438394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140439913 140440051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140440986 140441111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140441737 140441814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140442124 140442232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140442320 140442423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGCAGGACGCTGAGAACGTGGCGGTGCCCGAGGCGGCCGAGGAGCGGGCTGAGCCCGCGAGGCAGCAGC
CGGCCTCCGAGTCGCCGCCGACGGACGAGGCGGCAGGGTCTGGGGGGTCCGAAGTGGGGCAGACGGAAGA
CGCCGAAGAAGACGCCGAGGCCGGACCGGAGCCCGAAGTGAGGGCCAAGCCGGCGGCCCAATCCGAAGAG
GAAACGGCGACGAGTCCGGCCGCCTCGCCCACGCCGCAGTCGGCGGAGCGGTCCCCGTCGCAGGAGCCCT
CTGCTCCCGGGAAGGCAGAGGCCGTTGGCGAGCAGGCCCGGGGGCACCCCTCGGCTGGAGCGGAGGAGGA
GGGCGGGTCTGATGGGAGCGCGGCTGAGGCGGAGCCGCGGGCTCTGGAGAACGGAGAGGCAGATGAGCCC
TCCTTCAGCGACCCCGAGGATTTCGTAGACGACGTGAGCGAGGAAGAACTACTTGGTGATGTACTCAAAG
ATCGGCCTCAGGAAGCGGACGGGATTGACTCGGTGATTGTTGTAGACAACGTCCCTCAGGTGGGGCCAGA
CCGACTTGAGAAACTCAAAAATGTCATCCACAAGATCTTCTCCAAGTTTGGGAAAATCATAAATGACTAT
TACCCTGAGGAGGACGGAAAGACGAAAGGGTACATCTTTCTGGAGTACGCTTCTCCCGCCCATGCTGTGG
ATGCTGTGAAAAACGCCGATGGCTACAAGCTGGACAAGCAGCACACGTTCCGGGTCAACCTCTTCACCGA
CTTTGACAAGTACATGACGATCAGCGATGAGTGGGACATTCCAGAGAAGCAGCCTTTCAAAGACCTGGGC
AATTTGCGTTACTGGCTGGAAGAGGCAGAGTGTAGAGATCAGTACAGTGTGATTTTTGAGAGCGGAGACC
GGACGTCCATCTTCTGGAATGACGTCAAGGACCCAGTCTCAATTGAAGAAAGAGCGAGATGGACAGAGAC
GTACGTGCGCTGGTCCCCTAAGGGTACCTACCTGGCCACTTTCCATCAGCGGGGTATCGCCCTCTGGGGA
GGGGACAAGTTCAAGCAGATTCAGAGGTTCAGCCACCAAGGCGTGCAGCTCATCGACTTCTCTCCGTGTG
AAAGATACTTGGTAACGTTCAGCCCTCTGATGGACACTCAGGATGACCCTCAGGCCATCATCATCTGGGA
CATCCTCACGGGCCATAAGAAGAGAGGTTTTCACTGCGAAAGCTCAGCCCACTGGCCCATCTTCAAGTGG
AGCCATGATGGCAAATTCTTTGCAAGAATGACCCTGGATACTCTTAGCATCTATGAAACACCTTCCATGG
GCCTTTTGGACAAGAAGAGTTTGAAGATCTCTGGAATTAAAGACTTTTCTTGGTCTCCGGGTGGTAACAT
CATTGCTTTTTGGGTGCCTGAAGACAAAGATATTCCAGCCAGGGTGACCCTGATGCAGCTCCCCACCAGA
CAGGAGATCCGAGTGAGGAATTTGTTCAATGTGGTTGATTGCAAGCTGCACTGGCAGAAAAATGGAGATT
ACCTATGTGTAAAAGTGGACAGGACTCCGAAAGGCACACAGGGAGTTGTCACAAATTTTGAAATATTCCG
AATGAGGGAGAAGCAGGTACCTGTTGATGTTGTTGAGATGAAAGAAACCATCATAGCCTTTGCCTGGGAA
CCCAATGGCAGTAAGTTTGCCGTGCTTCATGGTGAGGCCCCTCGGATCTCTGTCTCCTTCTACCACGTGA
AGAGCAACGGGAAGATTGAACTCATCAAGATGTTTGACAAGCAGCAAGCCAACACCATCTTCTGGAGTCC
CCAGGGGCAGTTCGTGGTGCTGGCCGGGCTGAGGAGCATGAACGGTGCCTTGGCGTTTGTCGACACTTCA
GACTGCACCGTCATGAACATTGCAGAGCACTACATGGCCTCCGATGTTGAATGGGACCCAACTGGCCGCT
ACGTGGTTACCTCTGTGTCGTGGTGGAGCCACAAGGTGGACAATGCTTACTGGCTGTGGACCTTCCAAGG
TCGCCTTCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCTCTGGAGACCAAGGCCCCCAACACTC
CTCAGCCAGGATCAGATAAAGCAAATTAAAAAGGATCTGAAGAAGTACTCCAAGATCTTTGAGCAGAAGG
ATCGCTTGAGCCAGTCCAAAGCTTCAAAGGAACTGGTGGAAAGAAGGCGGACCATGATGGAGGACTTCCG
GCAATACCGGAAAATGGCCCAGGAACTCTACATGAAGCAGAAGAACGAGCGTCTAGAGCTACGAGGAGGG
GTGGACACTGACGAGCTGGACAGCAACGTGGATGACTGGGAGGAAGAGACCATTGAGTTTTTTGTCACCG
AGGAAGTCATTCCTCTGGGAAGTCAGGAGTGA

Translation (803 aa):
MQDAENVAVPEAAEERAEPARQQPASESPPTDEAAGSGGSEVGQTEDAEEDAEAGPEPEVRAKPAAQSEE
ETATSPAASPTPQSAERSPSQEPSAPGKAEAVGEQARGHPSAGAEEEGGSDGSAAEAEPRALENGEADEP
SFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIINDY
YPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLG
NLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWG
GDKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKW
SHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTR
QEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWE
PNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTS
DCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTL
LSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGG
VDTDELDSNVDDWEEETIEFFVTEEVIPLGSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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