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Report for CCDS19837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19837.1 Public Mus musculus 5 Zfp12 23 108 98 CCDS HistoryNCBI Gene:231866Re-query CCDS DB by CCDS ID:19837.1Re-query CCDS DB by GeneID:231866See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077485.10 ENSMUSP00000076693.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077485.10Link to Ensembl Protein Viewer:ENSMUSP00000076693.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077485Re-query CCDS DB by Protein ID:ENSMUSP00000076693
Original member NCBI NM_177681.4 NP_808349.1 Updated not alive Link to Nucleotide Sequence:NM_177681.4Link to Protein Sequence:NP_808349.1Re-query CCDS DB by Nucleotide ID:NM_177681Re-query CCDS DB by Protein ID:NP_808349
Current member NCBI NM_177681.5 NP_808349.1 Accepted alive Link to Nucleotide Sequence:NM_177681.5Link to Protein Sequence:NP_808349.1Re-query CCDS DB by Nucleotide ID:NM_177681Re-query CCDS DB by Protein ID:NP_808349Link to BLAST:NP_808349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808349.1 654 Q7TSI0-2 654 100% 0 0

Chromosomal Locations for CCDS 19837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143236302 143236316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143239954 143240080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143244062 143245884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGAATACATCCTTAGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGC
AGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGT
GGATGAGATCCGGCACATGAGCAGGCTGATGGAGGAGGACCAGGGAGGTGAAGAGAACCAGTCAAGTTCA
GCTGTGTTCAGCTACAGAAGCCGGGCTGATGCCTCTAGTAAGGCCACTGATGGAGAAACAAAGCCCTTTC
CCTCACAGAAGGCCCTCCCTCAGTGCAACTCCTGTGAGAAGAGCCTGATGTGTGTCTCGGCGTTCATCCG
AAGCGACGGAAGCTACGCAAAACTGAGGCCCAATGTGTGTGCCGGGTGTGGGAAGCCCCTCCCCTGCAGC
AAGCCCGAGGAAACACACCCTGGAGGTGAGTCTTACGAATTTAGTGGGGATGGAGATGAGGACCCTCTCG
GTGAAGAAGGCGTGTATCAGAAGGGTCACTTTTTGGAGGAGCCCTTTGAATACGTTGAGTGCCAGAAATC
CTTCCCCAAGGGCACTGTGTTTCTTAATCACCTGGAAGAGGAGCCCTGCGACTGGAATGACGCTGAGGTC
GCTTTCCTGCAGACGTCAGACCTCAGTGCCCACCAGGATTCTCTCATGGAAATGAAGCCCTACGAGTGCC
AGCAGTGTGGGAAGTCCTTCTGCAAAAAGTCCAAGTTCGTCATCCATCAGAGGACTCACACAGGAGAGAA
GCCCTTCAAGTGCAGTCAGTGTGGGAAGTCCTTCTGCCAGAAGGGCACCCTCACCGTCCACCAGAGGACG
CACACCGGGGAGAAGCCCTACGAGTGTACCGAGTGCGGGAAGACCTTCTACCAGAAGCTGCACCTCATTC
AGCACCAGAGGACCCACTCGGGCGAGAAGCCCTACAAGTGTGGCTACTGCGGGAAGTCCTTCTGCCAGAA
GACGCATCTCACTCAGCACCAGAGGACGCACTCGGGAGAGAGGCCCTATGTTTGTCACGACTGTGGCAAG
ACGTTCTCTCAGAAGTCAGCACTCAATGACCACCAGAAGATCCACACGGGCGTCAAACTCTACAAATGCA
GCGAGTGTGGCAAGTGCTTCTGCCGCAAGTCCACGCTCACAACCCACATGAGGACGCACACGGGCGAGAA
GCCGTACGAATGCAACGAGTGCGGCAAGTTCTTCTCCAGGCTGTCGTACCTCACCGTGCATTACAGAACC
CACTCGGGGGAGAAGCCCTACGAGTGTGCGGAGTGCGGGAAGTCCTTCTACCTGAACTCAGCCCTTATGA
GACATCAGAGGGTGCACACGGGGGAGAAGCCTTACGAGTGTAACGAGTGTGGGAAATTATTCTCGCAGCT
GTCCTACCTCACCGTGCATCACAGAACTCACTCAGGAGTGAAGCCCTATGAGTGTAGCGAGTGTGGAAAG
ACCTTCTACCAGAATTCAGCCCTCTGTAGACACCGGAGAATTCACAGAGGGGAGAAGCCCTATGAATGCT
ACATCTGTGGCAAGTTCTTTTCTCAGATGTCTTACCTCACGATCCATCACAGAATTCACTCAGGGGAGAA
GCCCTATGAGTGCCGCGAGTGTGGGAAGTCCTTCTGCCAGAACTCAGCCCTCAACAGACACCAGCGCACG
CACACGGGAGAAAAAGCCTACGAGTGTTACGAGTGTGGGAAATGCTTCTCCCAGATGTCTTATCTCACTA
TCCATCACAGGATCCACTCGGGAGAGAAGCCCTTCGAGTGTAACGAGTGTGGGAAAGCCTTCTCTCGGAT
GTCGTACCTCACTGTGCACCACAGGACCCACTCAGGAGAGAAGCCCTATGAATGTACGGAGTGCGGGAAG
AAATTCTACCACAAGTCCGCGTTCAATAGCCATCAGAGAACTCACAGGAGAGGGAGCGGGAATGGGGTTG
ATTGA

Translation (654 aa):
MNTSLGPLSFKDVAVAFSQEEWQQLDPEERTTYRDVMLETYSNLVSVDEIRHMSRLMEEDQGGEENQSSS
AVFSYRSRADASSKATDGETKPFPSQKALPQCNSCEKSLMCVSAFIRSDGSYAKLRPNVCAGCGKPLPCS
KPEETHPGGESYEFSGDGDEDPLGEEGVYQKGHFLEEPFEYVECQKSFPKGTVFLNHLEEEPCDWNDAEV
AFLQTSDLSAHQDSLMEMKPYECQQCGKSFCKKSKFVIHQRTHTGEKPFKCSQCGKSFCQKGTLTVHQRT
HTGEKPYECTECGKTFYQKLHLIQHQRTHSGEKPYKCGYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGK
TFSQKSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHMRTHTGEKPYECNECGKFFSRLSYLTVHYRT
HSGEKPYECAECGKSFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTVHHRTHSGVKPYECSECGK
TFYQNSALCRHRRIHRGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECRECGKSFCQNSALNRHQRT
HTGEKAYECYECGKCFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHHRTHSGEKPYECTECGK
KFYHKSAFNSHQRTHRRGSGNGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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