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Report for CCDS19839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19839.1 Public Mus musculus 5 Ints15 23 108 98 CCDS HistoryNCBI Gene:231868Re-query CCDS DB by CCDS ID:19839.1Re-query CCDS DB by GeneID:231868See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046418.2 ENSMUSP00000041800.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046418.2Link to Ensembl Protein Viewer:ENSMUSP00000041800.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046418Re-query CCDS DB by Protein ID:ENSMUSP00000041800
Original member Current member NCBI NM_172726.4 NP_766314.3 Accepted alive Link to Nucleotide Sequence:NM_172726.4Link to Protein Sequence:NP_766314.3Re-query CCDS DB by Nucleotide ID:NM_172726Re-query CCDS DB by Protein ID:NP_766314Link to BLAST:NP_766314.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766314.3 448 Q8BGA7 448 100% 0 0

Chromosomal Locations for CCDS 19839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143301802 143302003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143306766 143306805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143307616 143308140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143311711 143311876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143314178 143314399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143314903 143315094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGAGCGACATCCGCCACTCGCTGCTGCGGCGCGACGCGCTGAGCGCCGCCAAGGAGGTGCTGTACCACC
TGGACATCTACTTCAGCAGCCAGCTGCAGAGCGCGCCGTTGCCCATCGTGGACAAGGGCTCCGTGGAGCT
GCTGGAGGAGTTCGTGTTCCAAGTGCCCAAGGAGCGCGGCGCGCAGCCCAAGAGACTGAATTCCCTCCAG
GAGCTCCAGCTTCTTGAAATCATGTGCAGTTACTTCCAGGAGCAAAGCAAGGACTCTGTGCGGCAGATCA
TTTTCTCCTCCCTTTTCAGCCCCCAAGGGAACAAAGCCGACGACAGCCGAATGAGCTTGTTGGGAAAGCT
GGTCTCCATGGCCGTGGCCGTGTGTCGGATCCCCGTGTTGGAATGTGCGGCCTCCTGGCTCCAGCGGACG
CCCGTGGTCTACTGCGTGAGGCTTGCCAGAGTGCTTGTGGAGGACTACTGCTGTCTGGTGCCGGGCTCCG
TTCAGACACTGAAGCAGATCTTTAGTGCCAGTCCTCGTTTCTGCTGCCAGTTCATAACGTCCGTGACCGC
CCTCTACGACCTGTCATCAGATGACCTCATCCCACCTTTGGACTTGCTTGAAATGATTGTCAGCTGGATT
TTCGAGGACCCGAGGCTGATTCTCATCACATTTTTAAATACTCCCATCGCCGCCAACCTGCCCATAGGAT
TTTTAGAGCTCACACCCCTCATTGGGCTGATCCGGTGGTGCGTGAAGGCCCCTCTGGCTTACAAAAGGAA
GAAGCCTTGCCTATCCAATGGCCACATCAGTCACAAGGTTGCCAAGGACTCGGGTGCCAGCACGGACAGA
GACTCGCACTTGCTGTACTCAAAGCTCCACCTGAGCGTCCTGCAGGTCCTCATGACGCTCCAGCTGCACC
TCACAGAGAAAAACCTGTACGGGCGCCTGGGGCTCATCCTGTTCGACCACATGGTCCCGCTTGTGGAGGA
GATCAACAGACTAGCAGATGAACTGAACCCCCTCAATGCCTCCCAGGAGATCGAGCTTGCCCTGGACCGC
TTGGCCCAGGCCTTGCAGGTGGCTATGACGTCGGGGGCCCTGCTGTGCACGAGAGATGACCTGAGAACCT
TGTGCTCCCGGCTGCCCCATAACAACCTGCTCCAGCTGGTGATCTCGGGCCCAGTGCAGCAGTCGCCACA
CACCGCTCTTCCCCCTGGGTTCTACCCGCATATCCATACTCCCCCGCTGGCCTATGGGGCTGTGCCAGCG
CACCCAGCTGCCCACCCAGCCCTGCCTACGCACCCAGGGCACACCTTCATCTCAGGTGTGACCTTCCCGT
TCAGGCCCATCCGCTAG

Translation (448 aa):
MSDIRHSLLRRDALSAAKEVLYHLDIYFSSQLQSAPLPIVDKGSVELLEEFVFQVPKERGAQPKRLNSLQ
ELQLLEIMCSYFQEQSKDSVRQIIFSSLFSPQGNKADDSRMSLLGKLVSMAVAVCRIPVLECAASWLQRT
PVVYCVRLARVLVEDYCCLVPGSVQTLKQIFSASPRFCCQFITSVTALYDLSSDDLIPPLDLLEMIVSWI
FEDPRLILITFLNTPIAANLPIGFLELTPLIGLIRWCVKAPLAYKRKKPCLSNGHISHKVAKDSGASTDR
DSHLLYSKLHLSVLQVLMTLQLHLTEKNLYGRLGLILFDHMVPLVEEINRLADELNPLNASQEIELALDR
LAQALQVAMTSGALLCTRDDLRTLCSRLPHNNLLQLVISGPVQQSPHTALPPGFYPHIHTPPLAYGAVPA
HPAAHPALPTHPGHTFISGVTFPFRPIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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