NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19860.1 Public Mus musculus 5 Zkscan14 23 108 98 CCDS HistoryNCBI Gene:67235Re-query CCDS DB by CCDS ID:19860.1Re-query CCDS DB by GeneID:67235See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031632.8 ENSMUSP00000031632.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031632.8Link to Ensembl Protein Viewer:ENSMUSP00000031632.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031632Re-query CCDS DB by Protein ID:ENSMUSP00000031632
Original member Current member NCBI NM_023322.2 NP_075811.2 Accepted alive Link to Nucleotide Sequence:NM_023322.2Link to Protein Sequence:NP_075811.2Re-query CCDS DB by Nucleotide ID:NM_023322Re-query CCDS DB by Protein ID:NP_075811Link to BLAST:NP_075811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075811.2 521 Q9Z1D9 521 100% 0 0

Chromosomal Locations for CCDS 19860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145195154 145196199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145198677 145198800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145201280 145201675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCTGCAGGCTCTGGGGTCGTCCCGCCACCTCTCGGTGCTGGGCTTTGTACGGTGAAGGTGGAGGAGG
ACTCTCCGGGGAATCAGGAGTCCTCCGGTTCCGGAGATTGGCAGAACCCCGAAACTTCTCGAAAACAATT
CAGGCAGTTGCGCTACCAGGAAGTGGCCGGCCCTGAGGAGGCGCTGAGCCGACTTTGGGAGCTCTGTCGG
AGGTGGCTGAGGCCCGAGCTGCTCTCCAAGGAGCAGATCATGGAGCTGTTGGTGCTGGAGCAATTCCTCA
CCATCCTGCCCCAGGAGCTCCAGGCCTACGTGCGGGACCACAGCCCTGAAAGTGGGGAGGAGGCTGCGGC
CTTGGCGCGGACTCTGCAAAGAGCACTGGATCGGGCCTCTCCGCAGGGTTTTATGACCTTCAAGGATGTG
GCTGAATCTCTGACCTGGGAAGAGTGGGAACAGCTGGCTGCAGCTCGGAAAGGTTTCTGTGAAGAGAGCA
CAAAGGACGCTGGGAGCACAGTTGTGCCTGGCTTGGAAACACGAACTGTGAACACAGATGTGATTCTAAA
GCAGGAAATTTTAAAGGAGGCAGAGCCACAGGCATGGCTACAAGAAGTATCCCAGGGAATGGTCCCAGCA
CTTACCAAATGTGGTGACCCCTCTGAGGACTGGGAAGAAAAGCTGCCAAAAGCTGCTGTACTGCTGCAGC
TCCAGGGTTCTGAAGAGCAAGGACGCACTGCCATCCCGCTTCTCATCGGTGTGTCCAGAGAGGAAAGGGA
CTCTAAAAACAATGAGTCTGAGAACAGTGGCAGTTCTGTCCTTGGTCAGCACATCCAGACAGCAGAAGGA
CTGGGCACCAACAGTCAGTGTGGGGATGACCACAAACAAGGTTTCCATGTGAAATGCCATTCAGTGAAGC
CCCACAGCTCTGTGGACAGTGCTGTAGGGCTTCTTGAGACCCAGAGGCAGTTCCAGGAAGACAAACCTTA
CAAATGTGATAGCTGTGAGAAGGGCTTCAGACAGCGCTCGGACCTCTTCAAACACCAGAGAATCCACACA
GGTGAGAAGCCCTATCAGTGCCAAGAGTGTGGGAAACGCTTTAGTCAGAGCGCTGCCCTCGTTAAGCACC
AGCGGACACACACAGGTGAGAAGCCATATGCATGCCCAGAATGCGGGGAGTGCTTCAGGCAGAGCTCACA
TCTGAGTCGGCATCAGAGAACCCATGCCAGTGAGAAGTACTATAAATGTGAGGAGTGTGGGGAGATCGTT
CATGTTTCCAGCCTGTTCAGACATCAGAGACTACACAGAGGGGAGAGACCATACAAGTGTGGAGACTGTG
AGAAGAGCTTCAGACAGCGCTCAGACCTCTTCAAGCACCAGAGAACCCACACAGGAGAGAAGCCCTATGC
GTGTGTCGTCTGCGGGAGAAGATTCAGTCAGAGCGCCACCCTCATTAAACACCAGAGAACTCACACAGGA
GAAAAACCGTATAAATGTTTTCAATGTGGTGAAAGATTTAGACAGAGTACACACCTTGTCCGACACCAAA
GAATCCATCAAAATTCAGTCTCCTAG

Translation (521 aa):
MAAGSGVVPPPLGAGLCTVKVEEDSPGNQESSGSGDWQNPETSRKQFRQLRYQEVAGPEEALSRLWELCR
RWLRPELLSKEQIMELLVLEQFLTILPQELQAYVRDHSPESGEEAAALARTLQRALDRASPQGFMTFKDV
AESLTWEEWEQLAAARKGFCEESTKDAGSTVVPGLETRTVNTDVILKQEILKEAEPQAWLQEVSQGMVPA
LTKCGDPSEDWEEKLPKAAVLLQLQGSEEQGRTAIPLLIGVSREERDSKNNESENSGSSVLGQHIQTAEG
LGTNSQCGDDHKQGFHVKCHSVKPHSSVDSAVGLLETQRQFQEDKPYKCDSCEKGFRQRSDLFKHQRIHT
GEKPYQCQECGKRFSQSAALVKHQRTHTGEKPYACPECGECFRQSSHLSRHQRTHASEKYYKCEECGEIV
HVSSLFRHQRLHRGERPYKCGDCEKSFRQRSDLFKHQRTHTGEKPYACVVCGRRFSQSATLIKHQRTHTG
EKPYKCFQCGERFRQSTHLVRHQRIHQNSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH