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Report for CCDS19886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19886.1 Public Mus musculus 5 Rxfp2 23 108 98 CCDS HistoryNCBI Gene:140498Re-query CCDS DB by CCDS ID:19886.1Re-query CCDS DB by GeneID:140498See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065745.9 ENSMUSP00000067897.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065745.9Link to Ensembl Protein Viewer:ENSMUSP00000067897.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065745Re-query CCDS DB by Protein ID:ENSMUSP00000067897
Original member Current member NCBI NM_080468.2 NP_536716.2 Accepted alive Link to Nucleotide Sequence:NM_080468.2Link to Protein Sequence:NP_536716.2Re-query CCDS DB by Nucleotide ID:NM_080468Re-query CCDS DB by Protein ID:NP_536716Link to BLAST:NP_536716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536716.2 737 Q91ZZ5 737 100% 0 0

Chromosomal Locations for CCDS 19886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150018868 150018910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150035390 150035536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150038207 150038284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150043067 150043172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150044050 150044121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150048774 150048845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150049580 150049651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150051560 150051631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150052841 150052912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150055911 150055982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150056791 150056862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150059880 150059951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150060061 150060132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150063678 150063749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150066220 150066449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150067100 150067510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150070180 150070398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150080945 150081204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGTGGCTCCTACTTCATGTCATCCTTCTGACAGAGGTCAAAGATTTTGCACTGGCTGACAGCAGTATGG
TGGCTCCTCTGTGCCCCAAAGGGTATTTTCCCTGTGGGAATCTCACCAAATGCTTGCCCCGAGCCTTTCA
CTGCGATGGTGTGGATGATTGCGGGAATGGTGCCGACGAGGACAACTGTGGTGACACTAGTGGATGGACA
ACCATATTTGGCACAGTCCATGGGAATGTCAATAAAGTGACATTGACACAGGAGTGCTTTCTCAGCCAGT
ATCCACAGCACTGTTACTGCAGAGAAAATGAACTGGAATGTGTAAAGGCTGACTTAAAAGCTGTGCCAAA
GGTTTCCAGCAACGTAACATTACTATCTCTTAAGAAAAACAAAATCCACAGACTTCCAGTCAAGGTCTTC
AGCAGATACACAGAACTCAGAAAGATATACCTTCAGCACAACTGCATCACACACATCTCCAGGAGAGCAT
TCCTTGGATTACATAATCTACAAATACTGTATCTCAGCCATAACTGCATTACCTCTCTCAGGCCTGGGAT
ATTCAAAGACTTGCATCAGCTTGCTTGGCTAATTTTAGATGACAACCCGATCACCAGAATCTCACAGAAG
TCCTTTATGGGGTTAAACTCCTTGTTTTTCTTGTCCATGGTGGGTAACCGGCTCGAGGCCCTTCCTGAAA
CATTGTGTGCTCAGATGCCTCAACTCAACTGGGTGGATCTGGCAAACAATGGAATAAAGTACATAACGAA
CTCCACCTTCCTAACGTGCGACTCGCTCACGGTTCTGTTTCTGCCTAGAAATCAAATTGGTTTTGTTCCA
GAGAAGACATTTTCTTCATTAAAAAATTTAGGAGAACTGGACCTGTCTAGCAATATGATAACAAAACTCC
CAGTCCACCTTTTCAGCGACCTTCATCTTCTCCAGAAGCTGAACCTGTCATCCAACCCTCTTCTGTATGT
CCACAAGAACCAGTTTGGAAGTCTCAAACAACTTCAGTCTCTAGACCTGGAAAGGATAGAGATTCCAAAC
ATAAGCACAGGAATGTTCCAGCCAATGAAGAACCTTTCTCACATTTATTTGAAAACCTTTCGATACTGCT
CCTATGTCCCCCATGTCCGAATCTGTATGCCGTCGACTGATGGTATTTCTTCGTCTGAGGACCTCTTGGC
TAACGGTATCCTCAGAGTGTCTGTCTGGGTTATAGCTTTCATTACCTGCGTTGGGAATTTCCTTGTCATA
GCCGTGAGATCTCTCATTAAGGCTGAGAATACAACTCACGCTATGTCCATCAAAATCCTTTGTTGTGCCG
ATTGCCTGATGGGGGTGTACCTGTTCTCCGTGGGCGTCTTTGACATCAAGTACCGAGGGCAGTATCAGAA
GTATGCGCTGCTGTGGATGGAGAGTGTGCCCTGCCGCCTGCTGGGCTTCCTGGCCACGCTGTCCACAGAG
GTCTCGGTGCTGCTGCTGACATTCCTGACGCTGGAGAAGTTCCTTGTCATAGTATTCCCTTTCAGCAACC
TGCGCCTGGGCAAGCGCCAGACTGCTGTGGCCCTCGCCAGCATCTGGGTGGTGGGATTTCTCATAGCGGC
CGTTCCGTTCACCAGAGAGGATTATTTCGGCAACTTTTATGGGAAAAATGGAGTCTGCTTCCCACTTCAT
TATGACCAAGCAGAAGATTTTGGAAGTAGAGGGTACTCCCTTGGGATTTTCCTAGGTGTGAACTTGCTGG
CTTTCCTCGTCATCGTGATTTCCTATGTCACCATGTTCTGCTCCATTCATAAAACAGCCCTTCAGACTGC
AGAAGTGAGGAGCCACATCGGGAAGGAGGTGGCTGTTGCAAACCGGTTCTTTTTTATCGTGTTCTCTGAT
GCCATCTGCTGGATCCCTGTGTTTGTCGTTAAGATCCTGTCTCTCCTTCAAGTGGAGATACCAGGCACAA
TCACTTCCTGGATCGTGGTTTTTTTCCTTCCGGTGAACAGCGCCTTAAACCCCATCCTCTACACTCTGAC
GACCTCCTTTTTTAAGGACAAGTTGAAACAGTTGCTGCACAAACATCGGAGGAAACCCATCTTCAAAGTT
AAGAAGAAAAGTTTATCCGCTTCCATTGTGTGGACAGACGAGTCTTCACTTAAACTTGGAGTGTTGAGCA
AAATAGCCCTTGGGGACAGTATAATGAAGCCGGTCTCCCCGTAG

Translation (737 aa):
MWLLLHVILLTEVKDFALADSSMVAPLCPKGYFPCGNLTKCLPRAFHCDGVDDCGNGADEDNCGDTSGWT
TIFGTVHGNVNKVTLTQECFLSQYPQHCYCRENELECVKADLKAVPKVSSNVTLLSLKKNKIHRLPVKVF
SRYTELRKIYLQHNCITHISRRAFLGLHNLQILYLSHNCITSLRPGIFKDLHQLAWLILDDNPITRISQK
SFMGLNSLFFLSMVGNRLEALPETLCAQMPQLNWVDLANNGIKYITNSTFLTCDSLTVLFLPRNQIGFVP
EKTFSSLKNLGELDLSSNMITKLPVHLFSDLHLLQKLNLSSNPLLYVHKNQFGSLKQLQSLDLERIEIPN
ISTGMFQPMKNLSHIYLKTFRYCSYVPHVRICMPSTDGISSSEDLLANGILRVSVWVIAFITCVGNFLVI
AVRSLIKAENTTHAMSIKILCCADCLMGVYLFSVGVFDIKYRGQYQKYALLWMESVPCRLLGFLATLSTE
VSVLLLTFLTLEKFLVIVFPFSNLRLGKRQTAVALASIWVVGFLIAAVPFTREDYFGNFYGKNGVCFPLH
YDQAEDFGSRGYSLGIFLGVNLLAFLVIVISYVTMFCSIHKTALQTAEVRSHIGKEVAVANRFFFIVFSD
AICWIPVFVVKILSLLQVEIPGTITSWIVVFFLPVNSALNPILYTLTTSFFKDKLKQLLHKHRRKPIFKV
KKKSLSASIVWTDESSLKLGVLSKIALGDSIMKPVSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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