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Report for CCDS19900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19900.1 Public Mus musculus 6 Pon2 23 108 98 CCDS HistoryNCBI Gene:330260Re-query CCDS DB by CCDS ID:19900.1Re-query CCDS DB by GeneID:330260See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057792.8 ENSMUSP00000062670.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057792.8Link to Ensembl Protein Viewer:ENSMUSP00000062670.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057792Re-query CCDS DB by Protein ID:ENSMUSP00000062670
Original member Current member NCBI NM_183308.3 NP_899131.1 Accepted alive Link to Nucleotide Sequence:NM_183308.3Link to Protein Sequence:NP_899131.1Re-query CCDS DB by Nucleotide ID:NM_183308Re-query CCDS DB by Protein ID:NP_899131Link to BLAST:NP_899131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899131.1 354 Q62086 354 100% 0 0

Chromosomal Locations for CCDS 19900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5265321 5265479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5266112 5266240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5266965 5267046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5268978 5269178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5272325 5272451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5273001 5273166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5277872 5277927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5289013 5289083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5298212 5298285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGCCGGATGGTGGCTCTGAGTTTGCTGGGCATCGGGCTGGCGCTGCTGGGCGAGCGGTTCCTAGCGC
TCAGAAGTCGACTTAAAGCCTCCAGAGAAGTAGAATCTGTAGACCTTCCAAACTGCCACCTCATTAAAGG
AATCGAAACTGGAGCTGAGGACATTGACATTCTTCCCAATGGCCTGGCTTTCTTTAGCGTGGGCCTCAAG
TTTCCAGGGCTCCACAGCTTTGCACCGGATAAGCCTGGAGGGATACTGATGATGGATCTCAAAGACGAGA
GACCGAGGGCGCTGGAGTTGAGAGTCAGCTGGGGCTTTGATCTGGCTTCGTTTAACCCACATGGCATTAG
CACTTTCATAGATGACGATGATACAGTTTATCTCTTTGTTGTAAACCACCCACAATTCAAGAGTACAGTG
GAAATTTTTAAATTTCAAGAAGAAGAAAATTCTCTGTTGCACCTGAAAACAATTAAACACGAGCTCCTTC
CAAGTGTGAATGACATCATAGCTGTTGGGCCCACCCACTTCTACGCCACCAATGACCACTACTTCTCCGA
CCCTTTCTTGAAGTATTTGGAGACATACTTGAACCTACACTGGGCAAATGTTGTTTACTACAGTCCAGAA
GAAGTTAAACTGGTGGCAGAAGGATTCGATTCCGCCAACGGGATCAATATTTCACCTGATAAAAAGTATG
TCTACGTTGCTGACATACTGGCCCATGAAATTCATGTTTTGGAAAAACAACCTAATATGAATTTAACTCA
ACTAAAGGTTCTGCAGTTGGGCACGCTGGTGGACAATTTATCTATTGATCCTTCCTCGGGCGACATCTGG
GTCGGCTGTCACCCTAATGGACAGAGGCTCTTCGTGTACCACCCGAACCATCCTCCTGCATCAGAGGTCC
TCCGCATTCAGAACATTCTATCCGAGAAGCCATCAGTGACAACGGTGTATATCAACAACGGGTCTGTCCT
CCAGGGAAGTTCTGTGGCGACCATATATGATAGGAAACTTCTCGTAGGCACTTTATACCAGAAAGCCTTG
TACTGTGAACTCTAA

Translation (354 aa):
MGRMVALSLLGIGLALLGERFLALRSRLKASREVESVDLPNCHLIKGIETGAEDIDILPNGLAFFSVGLK
FPGLHSFAPDKPGGILMMDLKDERPRALELRVSWGFDLASFNPHGISTFIDDDDTVYLFVVNHPQFKSTV
EIFKFQEEENSLLHLKTIKHELLPSVNDIIAVGPTHFYATNDHYFSDPFLKYLETYLNLHWANVVYYSPE
EVKLVAEGFDSANGINISPDKKYVYVADILAHEIHVLEKQPNMNLTQLKVLQLGTLVDNLSIDPSSGDIW
VGCHPNGQRLFVYHPNHPPASEVLRIQNILSEKPSVTTVYINNGSVLQGSSVATIYDRKLLVGTLYQKAL
YCEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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