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Report for CCDS19914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19914.1 Public Mus musculus 6 Tmem106b 23 108 98 CCDS HistoryNCBI Gene:71900Re-query CCDS DB by CCDS ID:19914.1Re-query CCDS DB by GeneID:71900See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031556.13 ENSMUSP00000031556.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031556.13Link to Ensembl Protein Viewer:ENSMUSP00000031556.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031556Re-query CCDS DB by Protein ID:ENSMUSP00000031556
Original member Current member NCBI NM_027992.3 NP_082268.2 Accepted alive Link to Nucleotide Sequence:NM_027992.3Link to Protein Sequence:NP_082268.2Re-query CCDS DB by Nucleotide ID:NM_027992Re-query CCDS DB by Protein ID:NP_082268Link to BLAST:NP_082268.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082268.2 275 Q80X71 275 100% 0 0

Chromosomal Locations for CCDS 19914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13071744 13071963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13075036 13075099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13078092 13078251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13081540 13081680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13082413 13082462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13083369 13083422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13084188 13084326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGGAAAGTCTCTTTCTCACTTACCTTTGCATTCAAATAAAGAAGATGGCTATGATGGCGTTACATCGA
CAGACAATATGAGAAATGGATTGGTTAGCAGTGAAGTGCACAACGAAGACGGAAGAAATGGAGATGTCTC
TCAGTTCCCATATGTGGAATTTACTGGAAGAGATAGTGTCACTTGTCCCACTTGCCAAGGAACAGGAAGA
ATTCCTAGGGGACAAGAAAACCAACTGGTGGCATTGATTCCATATAGTGATCAGCGGTTACGGCCAAGAA
GAACAAAGCTGTATGTGATGGCGTCTGTGTTTGTCTGCCTGCTCCTGTCTGGATTGGCTGTGTTTTTTCT
TTTCCCTCGATCTATTGAGGTGAAGTACATTGGAGTAAAATCAGCCTATGTCAGCTACGACGCTGAAAAG
CGAACCATATATTTAAATATCACGAACACACTAAATATAACAAATAATAACTATTATTCTGTTGAAGTTG
AAAACATCACTGCTCAAGTCCAGTTTTCAAAAACCGTGATTGGAAAGGCTCGTTTAAACAACATAACTAA
CATTGGCCCACTTGATATGAAGCAGATTGATTATACGGTACCCACAGTTATTGCAGAGGAAATGAGTTAC
ATGTATGATTTCTGTACACTGCTCTCCATCAAAGTGCACAACATAGTACTCATGATGCAAGTTACTGTAA
CAACAGCATACTTTGGACACTCTGAGCAGATATCTCAGGAAAGGTACCAGTATGTCGACTGTGGAAGGAA
CACGACTTACCAGTTGGCCCAGTCTGAGTATCTAAATGTCCTTCAGCCACAACAATAA

Translation (275 aa):
MGKSLSHLPLHSNKEDGYDGVTSTDNMRNGLVSSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGR
IPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIEVKYIGVKSAYVSYDAEK
RTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITNIGPLDMKQIDYTVPTVIAEEMSY
MYDFCTLLSIKVHNIVLMMQVTVTTAYFGHSEQISQERYQYVDCGRNTTYQLAQSEYLNVLQPQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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