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Report for CCDS19965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19965.1 Public Mus musculus 6 Smo 23 108 98 CCDS HistoryNCBI Gene:319757Re-query CCDS DB by CCDS ID:19965.1Re-query CCDS DB by GeneID:319757See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001812.4 ENSMUSP00000001812.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001812.4Link to Ensembl Protein Viewer:ENSMUSP00000001812.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001812Re-query CCDS DB by Protein ID:ENSMUSP00000001812
Original member NCBI NM_176996.4 NP_795970.3 Updated not alive Link to Nucleotide Sequence:NM_176996.4Link to Protein Sequence:NP_795970.3Re-query CCDS DB by Nucleotide ID:NM_176996Re-query CCDS DB by Protein ID:NP_795970
Current member NCBI NM_176996.5 NP_795970.3 Accepted alive Link to Nucleotide Sequence:NM_176996.5Link to Protein Sequence:NP_795970.3Re-query CCDS DB by Nucleotide ID:NM_176996Re-query CCDS DB by Protein ID:NP_795970Link to BLAST:NP_795970.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795970.3 793 P56726 793 100% 0 0

Chromosomal Locations for CCDS 19965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29736011 29736353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29753470 29753675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29754322 29754531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29754692 29754864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29755174 29755393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29755483 29755606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29756781 29756873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29757257 29757365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29758336 29758521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29758866 29759014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29759484 29759618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29759852 29760285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCCGCTGGCCGCCCCGTGCGTGGGCCCGAGCTGGCGCCCCGGAGGCTGCTGCAGTTGCTGCTGCTGG
TACTGCTGGGGGGCCCGGGCCGGGGGGCGGCCTTGAGCGGGAACGTGACCGGGCCTGGGCCTCACAGCGC
CAGCGGGAGCTCGAGGAGGGACGTGCCGGTGACCAGCCCTCCGCCGCCGCTGCTGAGCCACTGCGGCCGG
GCCGCCCACTGCGAGCCTTTGCGCTACAACGTGTGCCTGGGCTCGGCGCTGCCCTACGGAGCCACCACCA
CGCTGCTGGCTGGGGACTCGGACTCGCAGGAGGAAGCGCACGGCAAGCTCGTGCTCTGGTCCGGCCTCCG
GAATGCCCCCCGCTGCTGGGCAGTGATCCAGCCCCTGCTGTGTGCTGTCTACATGCCCAAGTGTGAGAAT
GACCGAGTGGAGTTGCCCAGCCGTACCCTCTGCCAGGCCACCCGAGGCCCCTGTGCCATTGTGGAGCGGG
AGCGAGGGTGGCCTGACTTTCTGCGTTGCACACCGGACCACTTCCCTGAAGGCTGCCCAAACGAGGTACA
AAACATCAAGTTCAACAGCTCAGGCCAATGTGAAGCACCCTTGGTGCGAACAGACAACCCCAAGAGCTGG
TATGAGGACGTGGAGGGCTGTGGGATTCAGTGTCAGAACCCGCTGTTCACCGAGGCCGAGCACCAGGACA
TGCACAGCTACATCGCAGCCTTCGGGGCGGTCACTGGTCTCTGCACGCTCTTCACACTGGCCACCTTTGT
GGCTGACTGGCGGAACTCCAATCGCTACCCTGCGGTTATTCTCTTCTATGTCAATGCGTGTTTCTTCGTG
GGCAGCATTGGCTGGCTGGCCCAGTTCATGGATGGTGCCCGCCGAGAGATTGTTTGCCGAGCAGATGGCA
CCATGAGATTTGGGGAGCCCACCTCCAGTGAGACCCTGTCCTGTGTCATCATCTTTGTCATTGTGTACTA
TGCCTTGATGGCTGGAGTAGTCTGGTTCGTGGTCCTCACCTATGCCTGGCACACCTCCTTCAAAGCCCTG
GGCACCACCTACCAGCCTCTCTCGGGCAAGACATCCTATTTCCACCTGCTCACGTGGTCACTCCCCTTTG
TCCTCACGGTGGCAATCCTGGCTGTGGCTCAGGTAGATGGAGACTCCGTGAGTGGCATCTGTTTTGTAGG
CTACAAGAACTATCGGTACCGTGCTGGCTTTGTCCTGGCCCCAATTGGCCTGGTGCTTATTGTGGGAGGC
TACTTCCTCATCAGAGGGGTCATGACTCTGTTCTCCATCAAGAGCAACCACCCTGGGCTTCTGAGTGAGA
AGGCAGCCAGCAAGATCAACGAGACCATGCTGCGCCTGGGCATTTTTGGCTTCCTGGCCTTTGGCTTTGT
GCTCATCACCTTCAGCTGCCACTTCTATGACTTCTTCAACCAGGCTGAGTGGGAGCGTAGCTTCCGGGAC
TATGTGCTATGCCAAGCCAACGTGACCATCGGGCTGCCTACCAAGAAGCCCATTCCTGACTGTGAGATCA
AGAATCGGCCCAGCCTCCTGGTGGAGAAGATCAATCTATTTGCCATGTTTGGCACTGGCATTGCCATGAG
CACCTGGGTCTGGACCAAGGCCACCCTGCTCATCTGGAGGCGCACCTGGTGCAGGTTGACTGGGCACAGT
GATGATGAGCCCAAGAGAATCAAGAAGAGCAAGATGATCGCCAAGGCCTTCTCTAAGCGGCGTGAGCTGC
TGCAGAACCCGGGCCAGGAGCTCTCCTTCAGCATGCACACTGTCTCCCATGATGGACCTGTTGCGGGTTT
GGCTTTTGACCTCAATGAACCCTCAGCTGACGTCTCCTCTGCCTGGGCTCAGCATGTCACCAAGATGGTG
GCTCGGAGAGGAGCCATATTGCCCCAGGATGTGTCCGTTACCCCTGTGGCAACTCCAGTGCCACCAGAAG
AACAAGCCAACATGTGGCTGGTTGAGGCAGAGATCTCCCCAGAGTTAGAGAAGCGTTTGGGCCGGAAGAA
AAAGCGGAGGAAGAGGAAGAAGGAGGTGTGCCCCTTGAGGCCAGCCCCTGAGCTTCACCACTCTGCCCCT
GTTCCTGCCACCAGTGCAGTTCCTCGGCTGCCTCAGCTGCCTCGGCAGAAGTGCCTGGTAGCTGCAAACG
CCTGGGGAACAGGGGAGTCCTGCCGACAGGGAGCCTGGACTCTAGTCTCCAACCCCTTCTGCCCAGAGCC
TAGTCCCCATCAAGATCCATTTCTCCCTGGTGCCTCAGCCCCCCGGGTCTGGGCTCAGGGCCGCCTCCAG
GGGCTGGGATCCATTCATTCCCGCACTAACCTAATGGAGGCTGAGATCTTGGATGCAGACTCGGACTTCT
GA

Translation (793 aa):
MAAGRPVRGPELAPRRLLQLLLLVLLGGPGRGAALSGNVTGPGPHSASGSSRRDVPVTSPPPPLLSHCGR
AAHCEPLRYNVCLGSALPYGATTTLLAGDSDSQEEAHGKLVLWSGLRNAPRCWAVIQPLLCAVYMPKCEN
DRVELPSRTLCQATRGPCAIVERERGWPDFLRCTPDHFPEGCPNEVQNIKFNSSGQCEAPLVRTDNPKSW
YEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFV
GSIGWLAQFMDGARREIVCRADGTMRFGEPTSSETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKAL
GTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGG
YFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGFLAFGFVLITFSCHFYDFFNQAEWERSFRD
YVLCQANVTIGLPTKKPIPDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGHS
DDEPKRIKKSKMIAKAFSKRRELLQNPGQELSFSMHTVSHDGPVAGLAFDLNEPSADVSSAWAQHVTKMV
ARRGAILPQDVSVTPVATPVPPEEQANMWLVEAEISPELEKRLGRKKKRRKRKKEVCPLRPAPELHHSAP
VPATSAVPRLPQLPRQKCLVAANAWGTGESCRQGAWTLVSNPFCPEPSPHQDPFLPGASAPRVWAQGRLQ
GLGSIHSRTNLMEAEILDADSDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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