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Report for CCDS20202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20202.1 Public Mus musculus 6 Grid2 23 108 98 CCDS HistoryNCBI Gene:14804Re-query CCDS DB by CCDS ID:20202.1Re-query CCDS DB by GeneID:14804See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095852.4 ENSMUSP00000093536.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095852.4Link to Ensembl Protein Viewer:ENSMUSP00000093536.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095852Re-query CCDS DB by Protein ID:ENSMUSP00000093536
Original member Current member NCBI NM_008167.3 NP_032193.1 Accepted alive Link to Nucleotide Sequence:NM_008167.3Link to Protein Sequence:NP_032193.1Re-query CCDS DB by Nucleotide ID:NM_008167Re-query CCDS DB by Protein ID:NP_032193Link to BLAST:NP_032193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032193.1 1007 Q61625 1007 100% 0 0

Chromosomal Locations for CCDS 20202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63256857 63256944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63503292 63503447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63908866 63909150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63930907 63931112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64056099 64056152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64063865 64064038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64076782 64076943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64094320 64094439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64275795 64275896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64320002 64320199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64345563 64345875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64395194 64395332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64429655 64429850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64533581 64533747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64663160 64663400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 64665857 64666279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3024 nt):
ATGGAAGTTTTCCCCTTGCTCTTGTTTCTGTCCTTCTGTTGGTCTCGAACCTGGGACCTGGCGACCGCTG
ATTCTATCATCCACATCGGAGCAATTTTTGATGAATCTGCTAAAAAAGATGATGAAGTATTCCGCACAGC
AGTTGGTGACCTCAACCAGAATGAGGAAATCTTACAGACTGAGAAAATCACATTTTCTGTGACGTTTGTT
GATGGCAACAACCCTTTTCAAGCTGTTCAAGAAGCATGTGAACTTATGAACCAGGGCATCTTGGCCTTGG
TCAGCTCCATTGGTTGCACATCAGCTGGGTCCCTCCAGTCTTTGGCAGATGCCATGCATATCCCCCACCT
CTTCATTCAGCGCTCAACAGCTGGGACCCCAAGAAGTGGCTGTGGCCTCACCCGGAGCAACAGAAATGAT
GACTATACTCTTTCAGTTCGTCCACCTGTCTACTTGAATGAAGTCATCCTAAGAGTAGTCACAGAGTATG
CATGGCAGAAATTTATTATCTTCTATGACAGTGAATATGATATCCGTGGAATCCAGGAATTTTTGGACAA
AGTATCCCAGCAGGGAATGGATGTTGCCCTTCAAAAGGTGGAAAACAACATCAACAAAATGATCACCACA
CTCTTTGACACCATGAGGATAGAGGAGTTGAATCGCTATCGAGACACTCTTAGAAGAGCCATCCTTGTCA
TGAATCCTGCCACAGCCAAATCCTTCATAAGTGAGGTGGTGGAGACGAATCTGGTTGCTTTTGACTGTCA
CTGGATCATCATTAATGAGGAAATAAATGATGTGGATGTTCAGGAACTTGTCAGAAGGTCCATTGGAAGG
TTAACAATAATTCGGCAGACATTTCCAGTCCCCCAGAATATAAGTCAGCGCTGTTTCCGTGGCAACCATC
GAATTTCTTCATCACTGTGTGATCCGAAGGATCCCTTTGCACAGAATATGGAGATTTCTAACCTTTACAT
CTATGACACGGTGCTTCTGCTTGCGAATGCCTTCCATAAGAAGCTGGAGGACCGTAAGTGGCACAGCATG
GCAAGCTTGTCCTGTATCAGGAAAAACTCCAAGCCCTGGCAAGGAGGGCGGTCCATGCTGGAGACCATCA
AGAAGGGTGGAGTTAATGGATTGACTGGAGATCTAGAATTTGGAGAAAATGGAGGTAACCCCAATGTCCA
CTTTGAAATCCTTGGAACCAACTATGGAGAAGAACTTGGCAGGGGTGTCCGTAAACTTGGGTGCTGGAAT
CCTGTCACAGGTCTGAATGGATCACTGACAGACAAAAAACTGGAGAACAACATGCGGGGCGTGGTTCTAC
GAGTGGTGACTGTATTGGAGGAGCCTTTTGTAATGGTCTCTGAAAATGTCTTGGGAAAACCGAAGAAATA
CCAGGGCTTCTCCATTGATGTTTTGGATGCCCTATCTAACTACCTGGGTTTTAATTATGAAATTTATGTT
GCACCGGACCACAAATATGGAAGCCCACAAGAGGATGGGACATGGAATGGACTGGTAGGAGAACTTGTTT
TTAAGAGAGCTGACATTGGGATTTCAGCTTTAACCATCACTCCAGACCGGGAGAATGTTGTAGATTTTAC
AACACGCTACATGGACTACTCAGTGGGAGTCCTTCTTCGAAGGGCAGAAAAAACAGTGGATATGTTTGCC
TGCCTTGCACCATTTGATCTATCTCTGTGGGCCTGCATTGCTGGCACAGTGCTTCTTGTGGGACTCTTGG
TCTACCTCTTAAACTGGCTTAATCCCCCACGATTGCAAATGGGATCGATGACATCTACTACACTCTACAA
CTCCATGTGGTTTGTGTATGGGTCCTTTGTACAGCAAGGTGGGGAAGTCCCATACACAACTCTGGCAACC
CGAATGATGATGGGGGCTTGGTGGTTATTTGCTCTGATTGTCATCTCATCTTATACAGCCAACCTTGCCG
CTTTCCTCACTATCACCCGCATTGAGAGCTCCATCCAGTCTCTTCAGGATCTGTCCAAGCAAACAGATAT
CCCTTATGGCACAGTCTTGGACTCGGCAGTATATCAGCATGTCCGCATGAAGGGGCTGAATCCTTTCGAG
AGAGACAGCATGTATTCCCAGATGTGGAGGATGATCAACCGAAGCAATGGGTCAGAAAACAATGTTTTGG
AGTCCCAAGCAGGCATTCAAAAGGTAAAATATGGAAACTATGCTTTTGTATGGGATGCAGCTGTGTTGGA
ATATGTGGCTATTAACGACCCCGACTGTTCCTTCTACACTGTTGGGAACACTGTTGCTGACCGGGGGTAT
GGCATTGCACTGCAGCATGGCAGCCCCTACCGTGATGTCTTTTCACAAAGGATCCTGGAGCTGCAGCAGA
GTGGCGACATGGACATTCTCAAGCACAAATGGTGGCCTAAGAACGGCCAGTGTGACCTGTACTCCTCAGT
GGATGCAAAGCAGAAGGGAGGAGCCTTGGACATCAAGAGCCTGGCAGGCGTGTTCTGCATCCTGGCCGCG
GGAATTGTGCTCTCCTGCCTCATAGCTGTCCTCGAGACGTGGTGGAGCCGGAGGAAGGGCTCCCGGGTCC
CATCGAAAGAGGATGACAAGGAAATTGACCTGGAGCACCTCCATAGACGTGTAAATAGCTTGTGCACAGA
TGACGACAGCCCCCATAAACAGTTTTCCACCTCGTCAATTGACTTGACCCCTCTGGACATTGACACTTTG
CCAACACGCCAAGCCCTGGAGCAGATCAGTGATTTCAGAAACACTCACATCACCACCACCACCTTCATCC
CAGAGCAGATCCAGACTCTTAGCCGCACACTCTCAGCAAAAGCTGCCTCTGGCTTCGCTTTCGGCAGTGT
GCCTGAGCACCGAACTGGCCCTTTTAGGCACAGGGCTCCTAATGGGGGCTTTTTCAGGAGTCCTATCAAA
ACAATGTCATCTATTCCTTATCAGCCTACTCCCACTCTGGGGCTCAATCTGGGCAATGACCCCGACCGAG
GCACGTCCATATGA

Translation (1007 aa):
MEVFPLLLFLSFCWSRTWDLATADSIIHIGAIFDESAKKDDEVFRTAVGDLNQNEEILQTEKITFSVTFV
DGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGCGLTRSNRND
DYTLSVRPPVYLNEVILRVVTEYAWQKFIIFYDSEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITT
LFDTMRIEELNRYRDTLRRAILVMNPATAKSFISEVVETNLVAFDCHWIIINEEINDVDVQELVRRSIGR
LTIIRQTFPVPQNISQRCFRGNHRISSSLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKWHSM
ASLSCIRKNSKPWQGGRSMLETIKKGGVNGLTGDLEFGENGGNPNVHFEILGTNYGEELGRGVRKLGCWN
PVTGLNGSLTDKKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYV
APDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRAEKTVDMFA
CLAPFDLSLWACIAGTVLLVGLLVYLLNWLNPPRLQMGSMTSTTLYNSMWFVYGSFVQQGGEVPYTTLAT
RMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFE
RDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGY
GIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCDLYSSVDAKQKGGALDIKSLAGVFCILAA
GIVLSCLIAVLETWWSRRKGSRVPSKEDDKEIDLEHLHRRVNSLCTDDDSPHKQFSTSSIDLTPLDIDTL
PTRQALEQISDFRNTHITTTTFIPEQIQTLSRTLSAKAASGFAFGSVPEHRTGPFRHRAPNGGFFRSPIK
TMSSIPYQPTPTLGLNLGNDPDRGTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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