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Report for CCDS20208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20208.1 Public Mus musculus 6 Prdm5 23 108 98 CCDS HistoryNCBI Gene:70779Re-query CCDS DB by CCDS ID:20208.1Re-query CCDS DB by GeneID:70779See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031976.13 ENSMUSP00000031976.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031976.13Link to Ensembl Protein Viewer:ENSMUSP00000031976.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031976Re-query CCDS DB by Protein ID:ENSMUSP00000031976
Original member Current member NCBI NM_027547.2 NP_081823.2 Accepted alive Link to Nucleotide Sequence:NM_027547.2Link to Protein Sequence:NP_081823.2Re-query CCDS DB by Nucleotide ID:NM_027547Re-query CCDS DB by Protein ID:NP_081823Link to BLAST:NP_081823.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081823.2 599 Q9CXE0 599 100% 0 0

Chromosomal Locations for CCDS 20208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 65779101 65779193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65794300 65794383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65831249 65831371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65855949 65856123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65857643 65857817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65859357 65859478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65862915 65862994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65869181 65869265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65870312 65870469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65881049 65881142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65883523 65883683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65886085 65886178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65901774 65901859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65927917 65928021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65935970 65936134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGCTGGGCATGTACGTACCAGACAGGTTCGCCCTGAAGTCGTCCCGGGTCCAGGACGGGATGGGGCTCT
ACACGGCCCGCCGCGTGCGCAAGGGTGAAAAATTTGGACCCTTCGCTGGGGAGAAGCGAATGCCTGAAGA
CTTGGATGAAAATATGGACTACAGACTGATGTGGGAGGTACGTGGGAGCAAGGGAGAAGTTCTGTATATT
TTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGA
AGAACCTGGCTGCCATTCAAGAAGGAGAAAATATTTTCTACTTGGCAGTTGATGATATAGAAACAGATAC
AGAGCTTTTGATTGGCTACCTGGACAGTGATGTGGAGGCAGAGGAGGAGGAGCAACAAGCTCTGACCATG
ACCAAAGAAGGCAAAGTTGACCACTCTAAGGGACAGTTGGCAGCTGGAAGTAAAGGTCACCTTGGCTGTG
AAGAGGACTTTGCCTGTCCACAGTGTGAATCGAGCTTTCCCAGTGAGGAAGTCCTTACTGAGCACCTTCA
GAGCTTGCACCAGAAGCCCACAGGGGAGAAAGAGTTCAAATGCGAGAACTGCGGGAAGAAATTCCCTGTG
AGGCAGGCCTTGCAGAGACATTTTGAGCAGCACCGGAAGGCTTGCCGAGGGGAGGCCAGGTTTGTGTGCA
AAGCCGACAGCTGCGGGAAGAGGCTGAAAAGCAAGGATGCCCTGCGAAGGCACCAGGAAAATGTCCACAC
CGGTGATCCTAAGAGAAAACTCATATGCTCGGTGTGCAATAGAAAATGTACCTCAGTGTCAAGCCTGCAG
GAGCACAGGAAGATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGCTAATCAGC
TGAAGCGTCACATGATTACCCACTCAGAAAAGCGGCCTTATAACTGTGAGATCTGTAACAAGTCCTTCAA
GAGGCTCGATCAAGTGGGCGCCCACAAAGTGATCCACAGTGAGGACAAACCCTACCAGTGCAAGCTCTGT
GGCAAGGGCTTTGCTCACAGAAACGTTTACAAGAACCACAAGAAGACCCACTCCGAGGAGAGACCTTTCC
AGTGTGATGCATGTAAAGCCTTGTTCCGCACGCCCTTTTCTCTGCAGAGACACCTGTTAATCCACAACAG
TGAGAGGACTTTTAAGTGTCACCACTGTGATGCCACATTTAAAAGGAAGGATACATTAAACGTTCATGTC
CAGGTGGTCCATGAAAGACACAAGAAGTACCGATGTGAGCTGTGCAATAAGGCCTTTGTCACACCTTCAG
TGCTTAGGAGTCATAAGAAGACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATT
TGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAGGTGAGCGCCCCTATCAATGCCCGTAC
TGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGGGAGAAGCCCT
ACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAACACAAGAGGACACACAC
AGGAGAAAAGCCTTTTCAGTGTGACGTATGTGACTTGGCTTTTAGCCTGAAGAAAATGCTTATTCGACAC
AAGATGACACACAATCCTAACCGTCCGATGGCAGAGTGCCATTTCTGCCATAAGAAGTTTACAAGAAATG
ACTACCTCAAAGTGCACATGGACAACATCCATGGGGTAGCTGACAGCTAA

Translation (599 aa):
MLGMYVPDRFALKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEVRGSKGEVLYI
LDATNPRHSNWLRFVHEAPSQERKNLAAIQEGENIFYLAVDDIETDTELLIGYLDSDVEAEEEEQQALTM
TKEGKVDHSKGQLAAGSKGHLGCEEDFACPQCESSFPSEEVLTEHLQSLHQKPTGEKEFKCENCGKKFPV
RQALQRHFEQHRKACRGEARFVCKADSCGKRLKSKDALRRHQENVHTGDPKRKLICSVCNRKCTSVSSLQ
EHRKIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDKPYQCKLC
GKGFAHRNVYKNHKKTHSEERPFQCDACKALFRTPFSLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHV
QVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKVCPYCGQKFASSGTLRVHIRSHTGERPYQCPY
CEKGFSKNDGLKMHIRTHTREKPYQCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRH
KMTHNPNRPMAECHFCHKKFTRNDYLKVHMDNIHGVADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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