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Report for CCDS20340.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
20340.1 |
Public |
Mus musculus |
6 |
Podxl2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:319655](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:20340.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:319655](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 20340.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000038409.11 |
ENSMUSP00000040417.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000038409.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000040417.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000038409](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000040417](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000061262.10 |
ENSMUSP00000058985.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000061262.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000058985.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000061262](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000058985](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001364575.1 |
NP_001351504.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001364575.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001351504.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001364575](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001351504](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001364575.2 |
NP_001351504.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001364575.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001351504.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001364575](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001351504](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001351504.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_176973.4 |
NP_795947.3 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_176973.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_795947.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_176973](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_795947](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_176973.5 |
NP_795947.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_176973.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_795947.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_176973](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_795947](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_795947.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 20340.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1620 nt): ATGGGTCTAGACGCCGGCCTAGCCCCAGGCTCGGGCTTCCCCAGTGAGGACAGCGAGGAGTCCCGGCTCC TGCAGCCGCCACAGTACTTCTGGGAAGAAGAGGAACTAAACGGCTCCAGCCTGGACCTGGGTCCCACTGC AGACTACGTCTTCCCAGACCTGACTGAGAAGGTGGCGTCCATGGAAGACCCAGGCCAGGCTCCGGACCTG CCAAACCTCCCCTCCATCCTGCCCAAGATGGATCTTGCTGAGCCTCCCTGGCATATGCCTCTGCAGGAGG AGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAAGGGAAGAAGAGGAGAGGGAGAAGGAAGCAGAGGAGGA GGAGGAAGAGGAAGAGCTGCTCCCTGTGAGCGGGTCCCCAGGAGCCACCGCACAGGCCCATGCCCCTTCA CCTAGCACCAGCAGCAGCACCAGCAGCCAGAGTCCTGGGGCCACCCGGCACAGGCAGGAGGATTCTGGAG ACCAGGCCACATCAGGCATGGAAGTGGAGAGCAGTGTGAAACCCACCTTGTCAGTGCCCTCAGTCACCCC AAGTACAGTGGCCCCGGGGGTTCAGAACTATAGCCAGGAGTCTGGGGGCACTGAGTGGCCAACTGGGGGG CTGGGGGTCCAGTCTGAGGTTCCCCAGGGAGCTGGTGAGGGGGCCACAGTGGGAGCAGCTGACTTCGATG GCCAGCAGGGGGCACTGCCGTCCTCTTCACTCCCACAAACAGTGCCTCCAAGTGGGACTGAGGTCCCCAG TGAGGGTCCCCTTTACCCCAGAATCCCAGACTCTCTCCCACCTGGACCCCAAGACACAGAGTCAACCCCT TCCTCTGCTACCTGGGGACAAGAAGGTCTCAGTGAGCAGCCCCTGGAGGGTCAGGCAGCTGAAGCTCACT CACTAACACCGTGGGACTCTACTCAGGTGATCTGCAAGGATTGGAGCAACCTGGCCGGGAAGAGCTACAT CATCCTGAACATGACAGAGAACATAGACTGTGAAGTATTTCGGCGGCACCGGGGACTACGGCTCCTAGCT CTGGTGGAGGAGGTACTGCCACGCCACCGCAGTGGCCATCGTGGAGACTGGCATATTTCTCTGAGCAAGC CCAGTGAGAAAGAGCAACACCTGCTGATGACCCTTGTAGGAGAACAGGGCGTGGTACCCACTCAAGATGT CCTTTCCATGCTCAGTGGCATCCGCAGGAGTCTGGAGGAGATTGGCATCCAGAACTACTCCACCACCAGC AGCTGCCAGGCACGAGCCACCCAGGTGCGCAGTGACTACGGGACGCTCTTTGTAGTGCTGGTGATCATTG GTGTCATCTGCTTCATCATCATTGTGCTTGGCCTACTCTACAATTGTTGGCAGCGCCGGATGCCCAAGCT CAAACACGTGTCGCACGGTGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAATCCCACGCTGGAC GTGGCCAGCGACAGCCAGTCGGAGATGCAGGAGAAGCAGCCCAGCCTGAACGGTGGGGCCATCAACGGCC CGAGCAGCTGGAGCGCGCTCATGGGCAGCAAACGCGACCCTGAGGACTCGGACGTGTTCGAGGAGGACAC TCACCTGTGA
Translation (539 aa): MGLDAGLAPGSGFPSEDSEESRLLQPPQYFWEEEELNGSSLDLGPTADYVFPDLTEKVASMEDPGQAPDL PNLPSILPKMDLAEPPWHMPLQEEEEEEEEEEEEREEEEREKEAEEEEEEEELLPVSGSPGATAQAHAPS PSTSSSTSSQSPGATRHRQEDSGDQATSGMEVESSVKPTLSVPSVTPSTVAPGVQNYSQESGGTEWPTGG LGVQSEVPQGAGEGATVGAADFDGQQGALPSSSLPQTVPPSGTEVPSEGPLYPRIPDSLPPGPQDTESTP SSATWGQEGLSEQPLEGQAAEAHSLTPWDSTQVICKDWSNLAGKSYIILNMTENIDCEVFRRHRGLRLLA LVEEVLPRHRSGHRGDWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLSGIRRSLEEIGIQNYSTTS SCQARATQVRSDYGTLFVVLVIIGVICFIIIVLGLLYNCWQRRMPKLKHVSHGEELRFVENGCHDNPTLD VASDSQSEMQEKQPSLNGGAINGPSSWSALMGSKRDPEDSDVFEEDTHL
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