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Report for CCDS20372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20372.1 Public Mus musculus 6 Nr2c2 23 108 98 CCDS HistoryNCBI Gene:22026Re-query CCDS DB by CCDS ID:20372.1Re-query CCDS DB by GeneID:22026See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113460.7 ENSMUSP00000109087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113460.7Link to Ensembl Protein Viewer:ENSMUSP00000109087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113460Re-query CCDS DB by Protein ID:ENSMUSP00000109087
Original member NCBI NM_011630.3 NP_035760.1 Updated not alive Link to Nucleotide Sequence:NM_011630.3Link to Protein Sequence:NP_035760.1Re-query CCDS DB by Nucleotide ID:NM_011630Re-query CCDS DB by Protein ID:NP_035760
Current member NCBI NM_011630.4 NP_035760.1 Accepted alive Link to Nucleotide Sequence:NM_011630.4Link to Protein Sequence:NP_035760.1Re-query CCDS DB by Nucleotide ID:NM_011630Re-query CCDS DB by Protein ID:NP_035760Link to BLAST:NP_035760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035760.1 596 P49117 596 100% 0 0

Chromosomal Locations for CCDS 20372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 92139819 92139890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92149604 92149804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92152315 92152417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92154335 92154514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92156572 92156719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92157406 92157499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92158330 92158463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92159212 92159389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92160319 92160440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92161913 92162052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92163121 92163258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92164188 92164293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92167459 92167633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGACCAGCCCCTCCCCGCGCATCCAGATAATTTCCACCGACTCTGCGGTAGCCTCACCTCAGCGCATTC
AGATTGTAACAGACCAGCAGACAGGACAAAAGATCCAGATAGTCACCGCAGTGGATGCCTCTGGATCCTC
TAAACAGCAGTTCATCCTAACCAGCCCAGATGGAGCTGGAACTGGGAAGGTGATCCTGGCTTCTCCGGAA
ACATCCAGTGCCAAGCAGCTCATATTCACCACCTCGGACAACCTTGTCCCTGGCAGGATCCAGATCGTCA
CGGATTCTGCTTCTGTGGAGCGTTTGCTGGGGAAGGCAGACGTCCAGCGGCCCCAGGTGGTGGAGTACTG
TGTGGTCTGTGGCGACAAAGCCTCTGGCCGGCACTATGGGGCTGTCAGTTGTGAAGGTTGCAAAGGTTTC
TTCAAAAGGAGCGTGAGGAAGAATCTGACCTACAGCTGTCGGAGCAGCCAAGACTGCATCATCAACAAGC
ACCACCGTAACCGCTGCCAGTTCTGCCGGCTGAAGAAGTGCCTGGAGATGGGCATGAAAATGGAGTCTGT
ACAGAGTGAACGGAAGCCCTTTGATGTGCAACGGGAGAAACCAAGCAATTGTGCTGCTTCCACTGAGAAG
ATCTATATCCGGAAAGACCTGAGAAGTCCTCTGATAGCCACTCCCACATTTGTGGCAGACAAAGATGGAG
CAAGACAAACAGGTCTTCTTGATCCAGGGATGCTTGTGAACATCCAACAGCCTTTGATACGTGAGGATGG
TACAGTTCTCCTGGCCGCGGATTCCAAGGCTGAAACAAGCCAAGGAGCTCTAGGTACACTGGCAAATGTA
GTGACCTCTTTGGCCAACCTGAGTGAATCTTTGAACAACGGTGATGCTTCAGAAATGCAGCCAGAGGACC
AGTCTGCAAGTGAGATTACTCGGGCATTTGACACCTTAGCGAAAGCACTTAATACCACAGATAGTGCTTC
ACCTCCAAGCCTGGCAGATGGGATAGATGCTAGTGGAGGAGGGAGTATCCATGTCATCAGCAGAGATCAG
TCAACACCCATCATTGAAGTTGAAGGCCCTCTCCTTTCAGACACACATGTCACATTCAAGCTTACAATGC
CCAGTCCTATGCCAGAGTACCTCAATGTACATTACATCTGTGAGTCTGCATCCCGCCTGCTTTTCCTCTC
CATGCACTGGGCAAGGTCAATCCCAGCCTTCCAGGCACTTGGACAGGACTGTAATACCAGCCTGGTGAGG
GCCTGCTGGAATGAGCTCTTCACTCTTGGCCTGGCCCAGTGTGCCCAGGTCATGAGTCTCTCCACCATCC
TGGCAGCCATTGTCAACCACCTACAGAACAGCATCCAGGAAGATAAGCTTTCTGGTGACCGGATAAAGCA
AGTGATGGAGCACATCTGGAAGCTGCAGGAGTTCTGTAACAGCATGGCGAAACTGGATATAGACGGCTAT
GAGTACGCATACCTTAAAGCTATAGTTCTCTTTAGTCCCGATCATCCAGGTTTGACAGGCACAAGCCAGA
TTGAGAAATTTCAGGAGAAGGCACAGATGGAATTACAGGACTATGTGCAGAAAACCTACTCTGAAGATAC
TTACAGATTGGCCAGGATTCTTGTCCGCCTACCAGCACTCAGGCTCATGAGCTCCAACATAACAGAAGAA
CTTTTTTTTACTGGTCTCATTGGCAATGTTTCAATAGACAGCATAATTCCTTACATCCTCAAGATGGAGA
CAGCAGAATATAATGGCCAGATCACTGGAGCCAGTCTATAG

Translation (596 aa):
MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSSKQQFILTSPDGAGTGKVILASPE
TSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGF
FKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEK
IYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAADSKAETSQGALGTLANV
VTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQ
STPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVR
ACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGY
EYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEE
LFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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