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Report for CCDS20390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20390.1 Public Mus musculus 6 Gxylt2 23 108 98 CCDS HistoryNCBI Gene:232313Re-query CCDS DB by CCDS ID:20390.1Re-query CCDS DB by GeneID:232313See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032157.8 ENSMUSP00000032157.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032157.8Link to Ensembl Protein Viewer:ENSMUSP00000032157.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032157Re-query CCDS DB by Protein ID:ENSMUSP00000032157
Original member Current member NCBI NM_198612.2 NP_941014.1 Accepted alive Link to Nucleotide Sequence:NM_198612.2Link to Protein Sequence:NP_941014.1Re-query CCDS DB by Nucleotide ID:NM_198612Re-query CCDS DB by Protein ID:NP_941014Link to BLAST:NP_941014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941014.1 444 Q810K9 444 100% 0 0

Chromosomal Locations for CCDS 20390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 100704844 100705124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100733181 100733370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100750398 100750529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100783109 100783360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100787211 100787334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100798101 100798273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100804518 100804700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGAAGCTCCGCAGCAAGGCGGCAGCGCTGCTCCTGCTCGCGCTGGCCGTGCTGCTGCTAGCGCTGCTGT
CCTTGCGCGCCCGCCGGGACCCGGAGCCCCCTGGGTTCCCCGCGCGCCCGGAGGCTGCCCCTCAGCGCCG
CCACGCGCCGGTCCCCACGCTCCCTCCGGAGCCCCGCGCCTTCCCCGGAGCCGCTGGCCGGCGCTCCCCC
AGGCGCCAGCCCCCACGTCTGCGCCCCCGAGCGGGCCGCCCGCGCGCCGCCAGCCGCGAGAAGTTGGCGA
GGAGGCCTGGGGAAACGAGGAGCTTGCACTCTGTGCCACCCGAACTCTGGATTCACCTGGCCGTGGTGGC
CTGTGGCAACCGGCTGGAGGAAACTCTGGTCATGCTCAAGTCAGCTGTGCTTTTCAGCCACAGGAAGATG
CGCTTTCACATCTTCACAGAAGATGCTCTGAAGCCCGAGTTTGATAAACAGTTGCGCCAGTGGCCCGACT
CCTATACAAAGAAGTTTGAGCACAGACTCTACCCTATCACATTTTCCGTCGGAAACCCTCAGGAATGGAA
GAAACTATTCAAACCCTGTGCCGCCCAGAGGCTCTTTCTCCCGGCGATCTTAAAGGACGTGGACTCGCTT
CTCTACGTGGACACTGACGTCCTCTTTCTGCGGCCTGTGGACGACATCTGGAAGCTTCTGAGGCAGTTTA
ACTCCACCCAGCTTGCTGCTATGGCCCCAGAGCATGAAATCCCGAAGATCGGCTGGTACAGTCGCTTTGC
CCGGCATCCTTTCTACGGCTCTGCCGGGGTTAACTCCGGGGTCATGCTCATGAACTTGACTCGCATAAGA
AATACCCAGTTCAAGAACAGCCTGATTCCAGCAGGCCTGGCTTGGGAGGAGATGCTGCTTCCACTCTACC
AGAAGTATAAAAGTGCCATCACATGGGGAGACCAGGATTTATTAAATATTATTTTTTATTACAACCCAGA
GTGTCTCTATGTGTTCCCCTGCCAGTGGAACTACCGCCCTGACCATTGCATGTATGGAAGCAACTGCAAA
GAGGCTGAACGGGAAGGCGTGTCTGTTCTGCATGGCAACCGGGGTGTCTACCACGACGACAAACAACCCA
CTTTCCGAGCGCTTTATGAAGCCATCCGGGATTTTCCCTTTCAGGACAATCTGTTTCAATCTATGTACTA
CCCTCTGCAGCTGAAGTTTTTGGAGACGGTGCACACCCTGTGTGGACGGATCCCCCAGGTTTTTCTCAAG
CAAATTGAGAAGACGATGCGAAGGGCTTACGAGAAGCACGTCATCATCCACATGGGCCCCAACCCCATGA
GCTGA

Translation (444 aa):
MKLRSKAAALLLLALAVLLLALLSLRARRDPEPPGFPARPEAAPQRRHAPVPTLPPEPRAFPGAAGRRSP
RRQPPRLRPRAGRPRAASREKLARRPGETRSLHSVPPELWIHLAVVACGNRLEETLVMLKSAVLFSHRKM
RFHIFTEDALKPEFDKQLRQWPDSYTKKFEHRLYPITFSVGNPQEWKKLFKPCAAQRLFLPAILKDVDSL
LYVDTDVLFLRPVDDIWKLLRQFNSTQLAAMAPEHEIPKIGWYSRFARHPFYGSAGVNSGVMLMNLTRIR
NTQFKNSLIPAGLAWEEMLLPLYQKYKSAITWGDQDLLNIIFYYNPECLYVFPCQWNYRPDHCMYGSNCK
EAEREGVSVLHGNRGVYHDDKQPTFRALYEAIRDFPFQDNLFQSMYYPLQLKFLETVHTLCGRIPQVFLK
QIEKTMRRAYEKHVIIHMGPNPMS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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