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Report for CCDS20399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20399.1 Public Mus musculus 6 Lrrn1 23 108 98 CCDS HistoryNCBI Gene:16979Re-query CCDS DB by CCDS ID:20399.1Re-query CCDS DB by GeneID:16979See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049285.9 ENSMUSP00000037096.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049285.9Link to Ensembl Protein Viewer:ENSMUSP00000037096.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049285Re-query CCDS DB by Protein ID:ENSMUSP00000037096
Original member Current member NCBI NM_008516.4 NP_032542.1 Accepted alive Link to Nucleotide Sequence:NM_008516.4Link to Protein Sequence:NP_032542.1Re-query CCDS DB by Nucleotide ID:NM_008516Re-query CCDS DB by Protein ID:NP_032542Link to BLAST:NP_032542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032542.1 716 Q61809 716 100% 0 0

Chromosomal Locations for CCDS 20399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107567243 107569393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCCAGATTGAGCACTGGGAAAGCAGCTTGCCAGGTGGTGCTGGGCTTGCTGATAACTTCATTAACTG
AATCTTCCATACTGACTAGTGAGTGTCCCCAGCTTTGTGTTTGTGAAATTCGTCCTTGGTTTACCCCACA
GTCCACCTACAGAGAAGCCACCACCGTGGATTGTAATGACCTCCGCCTAACCAGGATCCCTGGCAACCTC
TCTAGTGACACACAAGTGCTTCTCTTACAGAGCAATAACATCGCCAAGACCGTGGACGAGCTGCAGCAGC
TCTTCAACTTGACCGAGCTGGATTTCTCCCAGAACAACTTTACAAACATCAAAGAGGTAGGGCTGGCAAA
CTTGACCCAGCTCACAACCCTGCATCTAGAGGAAAATCAGATTTCAGAGATGACGGATTACTGTCTGCAA
GACCTCAGCAACCTTCAAGAACTCTACATCAACCACAACCAGATCAGCACAATCTCTGCCAACGCCTTTT
CTGGCTTGAAAAATCTCTTGAGGCTGCACCTGAATTCCAATAAGTTGAAAGTGATCGATAGCCGCTGGTT
TGATTCCACTCCCAACCTGGAAATTCTCATGATTGGGGAAAACCCTGTGATTGGAATCCTGGACATGAAC
TTCAGACCTCTCTCCAACCTGAGAAGCCTAGTGTTAGCAGGAATGTACCTCACTGATGTTCCCGGAAACG
CCTTGGTAGGCTTGGATAGCCTCGAGAGCCTGTCTTTCTATGACAACAAACTGATCAAAGTCCCTCAACT
TGCCCTGCAAAAAGTTCCAAATTTGAAATTTTTAGACCTCAATAAAAATCCTATTCACAAAATCCAAGAA
GGAGACTTTAAAAATATGCTTCGGTTAAAAGAACTGGGAATCAACAACATGGGAGAGCTGGTTTCCGTGG
ACCGCTATGCCCTGGATAACTTGCCAGAATTGACAAAGCTCGAAGCAACCAATAACCCCAAACTGTCATA
CATCCACCGTTTGGCTTTCCGTAGTGTGCCGGCTCTAGAAAGCTTAATGTTGAACAACAATGCCTTGAAT
GCCGTGTACCAAAAAACAGTGGAATCTCTTCCCAATCTGCGTGAGATCAGCATCCACAGCAACCCGCTGA
GGTGTGACTGTGTCATCCACTGGATCAACTCCAACAAAACCAACATTCGCTTCATGGAGCCCCTCTCCAT
GTTCTGTGCCATGCCACCGGAATACAGGGGGCAGCAGGTGAAGGAGGTCCTAATCCAGGACTCAAGTGAG
CAGTGCCTCCCGATGATATCGCACGATACATTCCCTAATCATCTAAACATGGACATTGGTACAACACTTT
TCCTAGACTGTCGGGCCATGGCTGAGCCAGAACCAGAGATTTACTGGGTCACTCCCATTGGAAATAAGAT
AACCGTGGAAACTCTTTCAGACAAATACAAGCTGAGTAGTGAGGGCACCTTGGAGATAGCAAACATACAG
ATTGAAGACTCAGGAAGGTACACCTGCGTTGCCCAGAATGTCCAAGGAGCAGACACTCGAGTGGCAACTA
TCAAGGTTAATGGAACCCTTCTAGATGGTGCACAGGTGCTGAAAATATATGTCAAACAGACAGAATCTCA
TTCGATTTTAGTATCTTGGAAAGTTAATTCCAATGTCATGACATCGAACTTGAAATGGTCATCTGCCACT
ATGAAGATCGACAACCCCCACATAACATACACAGCCAGGGTGCCAGTAGATGTTCATGAATATAACCTAA
CACATCTGCAGCCTTCTACGGATTATGAAGTGTGTCTCACGGTGTCCAACATCCATCAGCAGACTCAGAA
GTCATGTGTCAATGTCACAACCAAAACCGCTGCCTTCGCCCTGGACATCTCTGACCATGAAACCAGCACC
GCCCTTGCTGCGGTGATGGGGTCCATGTTTGCCGTCATCAGTCTAGCATCCATCGCTATTTACATCGCGA
AAAGGTTTAAGAGGAAAAATTACCACCATTCGCTGAAAAAGTATATGCAAAAAACCTCGTCCATCCCACT
GAACGAGCTGTACCCCCCACTCATTAACCTCTGGGAAGCTGACAGTGACAAGGACAAAGATGGCTCGGCA
GACACCAAGCCAACCCAGGTTGACACATCCAGAAGCTATTACATGTGGTAA

Translation (716 aa):
MARLSTGKAACQVVLGLLITSLTESSILTSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLTRIPGNL
SSDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQISEMTDYCLQ
DLSNLQELYINHNQISTISANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMN
FRPLSNLRSLVLAGMYLTDVPGNALVGLDSLESLSFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQE
GDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALN
AVYQKTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQQVKEVLIQDSSE
QCLPMISHDTFPNHLNMDIGTTLFLDCRAMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEIANIQ
IEDSGRYTCVAQNVQGADTRVATIKVNGTLLDGAQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSAT
MKIDNPHITYTARVPVDVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKTAAFALDISDHETST
ALAAVMGSMFAVISLASIAIYIAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEADSDKDKDGSA
DTKPTQVDTSRSYYMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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