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Report for CCDS20431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20431.1 Public Mus musculus 6 Tatdn2 23 108 98 CCDS HistoryNCBI Gene:381801Re-query CCDS DB by CCDS ID:20431.1Re-query CCDS DB by GeneID:381801See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089018.10 ENSMUSP00000086412.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089018.10Link to Ensembl Protein Viewer:ENSMUSP00000086412.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089018Re-query CCDS DB by Protein ID:ENSMUSP00000086412
Original member NCBI NM_001033463.4 NP_001028635.2 Updated not alive Link to Nucleotide Sequence:NM_001033463.4Link to Protein Sequence:NP_001028635.2Re-query CCDS DB by Nucleotide ID:NM_001033463Re-query CCDS DB by Protein ID:NP_001028635
Current member NCBI NM_001033463.5 NP_001028635.2 Accepted alive Link to Nucleotide Sequence:NM_001033463.5Link to Protein Sequence:NP_001028635.2Re-query CCDS DB by Nucleotide ID:NM_001033463Re-query CCDS DB by Protein ID:NP_001028635Link to BLAST:NP_001028635.2

Chromosomal Locations for CCDS 20431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113697713 113698117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113702101 113702538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113704034 113704906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113707266 113707393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113709460 113709643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113710041 113710181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGCGTCGGAGCGGCGCAAGGTCAAGTATCACTGGGGCAGCACGTCGGAAGGGTGTCCCAGCAAGCGCA
GCCGCCCCCGGGAGCCCGGCAATGTGGCCCCCTCCAGCCGGCCAGGTCGCAGGTGTGCGTCGCGTCCTCG
AGGGGCCAGCAGCCCCCAGCGTCTGAAAGTCCGGCGCGGGGACGATGTGGCCCGCGCTCCTCGGAGCTCA
GTCCGCCGTCGCACCTCCTCTTCCTCTTCTTCGTCCTCTCTCTCTTCGGGCTCAGGTGTGGGTGAGGCCG
CTTCCCCTGGCTTCCTGATTGCGAGCCCTCGGAGACTATTTACGTCCAAGGGGTCCCCTCTGCACCCTGC
CCACTCCTCTCTAGAAGAAATGGCTTCTCTACGGAAGGAAGCTTGTAGCGTTAAGGTTGATTCTAAAGAT
AGTTCTTGCCGCTCTACGAACTCTGAATTTGCAACAGAAGCTGAGGGTCAGAGTGATGCTATGGAGGAAC
CCAACAAGTTCCAGAAAAGGAAGAAGGACAGGCCTCAAGACCAGGGCTCAAGAATGATCTACCTGAAGGC
CATCCAGGGCATCCTGGGGAAGTCAATGCCCAAGAAGAAGGGAGAAGCTGCCACCACTCAGGGGAAGGCA
AGCTTGGGAGACTGTCCTAATCAGGAAGGACCAAGCAGGAAGGTGGAAGGACCAAGCAAGAAGGTGGAAG
GACCAGCCAGGAGCAGGGACGGACCGTCCAGGAGTGGGGAAGGACGGTCCAGGAGCCGGGAAGAACTGGT
CAAGAGCGTTGAGGAGGGACCAGCTGCAAAGGTTACAGTTACTGTTTCTCAGAAAGAAGAGTCACATACG
AAGCACACAGACAGAGAGGTGGTGATGGAGCATCCCTCTTCAGGGAGTGACTGGTCAGATGTGGATGAGC
TGGCCACTGTGAGGTTCTCCCAAGAGGAACCTGTCCCACTGAAATACTCAGCAGTTTCAGAATCCTCTTC
CTTCCCCACTGACTGTGTAATGTACCCTCCTCATTTGTATAGTAGCCCATGGTGTGACTATGCCAGCTAC
TGGACTAGCAGCCATAAGACACCTGGTTATCCATTAGTGGGATCCAGCAACCATGACTCGGCACAGGCTG
GGAAGAGCAGCCAGGATCTTCTGAGTGTTCACTCCTCCAAGTCCCAGAGCATCTCCAAAGGCCTAGACAT
TGCCCAGGAAGGTAGGTTCCAGAATTCCCACTCACTTCGGTTCTCCAGAAGCACAGAGGAGGAGGAGGTG
AAGGGGAAGAGGACATTCCAAGAGGAGACACCACTTCACCACACCAGAGAACACACATCCAGCTCTTTGC
CAAGGAGCCACAGAGAGCTGAGCCTGGAAGAGGGCTTCATCGATACCCACTGTCATCTAGACATGCTCTA
CTCCAAGCTGTCTTTCAAGGGGACCTTTACAAAGTTCAGAAAGATTTATAGCAGCTCCTTCCCTAAGGAG
TTTCAAGGCTGCATCTCTGACTTCTGTGATCCAAGGACACTGACTGATGGCCTATGGGAGGAACTTCTGA
AAGAAGATCTGGTTTGGGGGGCTTTTGGCTGTCACCCTCATTTTGCACGATACTATAATGAGAGTCAAGA
AAGAAAGCTTTTGCATGCCTTACGCCACCCCAAGGCTGTGGCATTTGGGGAAATGGGGCTGGACTACTCT
CACAAGTGTACTACTCCAGTTCCTGAACAGCACCAGGTGTTTGAGAGGCAGCTGAAGCTGGCTGTGTCTC
TGAAGAAGCCCTTGGTCATTCACTGCCGTGAAGCTGATGAAGATTTGTTGGATATCATGAGAAAATTTGT
GCCCTCTGACTACAAGATCCATAGGCACTGCTTCACTGGCAGCTACTCAGTCATTGAGCCCTTGTTGAAG
TACTTCCCTAACATGTCCGTGGGCTTCACAGCAGTGCTGACCTACTCTTCCGCCTGGGAGGCTCGGGATG
CCCTTAGACAGATCCCGTTGGAGAGGATCATTGTGGAAACAGACGCACCCTACTTTCTCCCTCGCCAGGT
GCCGAGAAGTCTTTGCCAGTATGCTCATCCAGGCTTGGCCTTGCACACAGTTCGAGAGATTGCCAGGGTC
AAAGAGGAGTCACTTTCCCACACTCTGTCAGTTCTCCGAGAGAATACTTGTCGCCTCTACAGTCTTTGA

Translation (722 aa):
MASERRKVKYHWGSTSEGCPSKRSRPREPGNVAPSSRPGRRCASRPRGASSPQRLKVRRGDDVARAPRSS
VRRRTSSSSSSSSLSSGSGVGEAASPGFLIASPRRLFTSKGSPLHPAHSSLEEMASLRKEACSVKVDSKD
SSCRSTNSEFATEAEGQSDAMEEPNKFQKRKKDRPQDQGSRMIYLKAIQGILGKSMPKKKGEAATTQGKA
SLGDCPNQEGPSRKVEGPSKKVEGPARSRDGPSRSGEGRSRSREELVKSVEEGPAAKVTVTVSQKEESHT
KHTDREVVMEHPSSGSDWSDVDELATVRFSQEEPVPLKYSAVSESSSFPTDCVMYPPHLYSSPWCDYASY
WTSSHKTPGYPLVGSSNHDSAQAGKSSQDLLSVHSSKSQSISKGLDIAQEGRFQNSHSLRFSRSTEEEEV
KGKRTFQEETPLHHTREHTSSSLPRSHRELSLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSSSFPKE
FQGCISDFCDPRTLTDGLWEELLKEDLVWGAFGCHPHFARYYNESQERKLLHALRHPKAVAFGEMGLDYS
HKCTTPVPEQHQVFERQLKLAVSLKKPLVIHCREADEDLLDIMRKFVPSDYKIHRHCFTGSYSVIEPLLK
YFPNMSVGFTAVLTYSSAWEARDALRQIPLERIIVETDAPYFLPRQVPRSLCQYAHPGLALHTVREIARV
KEESLSHTLSVLRENTCRLYSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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