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Report for CCDS20485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20485.1 Public Mus musculus 6 Bcl2l13 23 108 98 CCDS HistoryNCBI Gene:94044Re-query CCDS DB by CCDS ID:20485.1Re-query CCDS DB by GeneID:94044See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009256.3 ENSMUSP00000009256.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009256.3Link to Ensembl Protein Viewer:ENSMUSP00000009256.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000009256Re-query CCDS DB by Protein ID:ENSMUSP00000009256
Original member Current member NCBI NM_153516.2 NP_705736.1 Accepted alive Link to Nucleotide Sequence:NM_153516.2Link to Protein Sequence:NP_705736.1Re-query CCDS DB by Nucleotide ID:NM_153516Re-query CCDS DB by Protein ID:NP_705736Link to BLAST:NP_705736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705736.1 434 P59017 434 100% 0 0

Chromosomal Locations for CCDS 20485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120848505 120848616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120862855 120862962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120865568 120865724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120870766 120870835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120876203 120876346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120886678 120887391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGCGTCCTCTACGACTGCGTCTCTAGGATTTCACTATGAAACAAAGTACGTTGTTCTCAGCTACTTGG
GACTTCTTTCTCAGGAGAAACAACAAGGTCCCTCACCCCCAGGAGTTCAACTAGATGTGGCTCCCCAGTC
TCTGAATCCAGAAGTTTTATTAAAACTTAAATCTGAGATTGAGGAAGAACTGAAAACCCTGGACAAAGAA
GTCTCTGAAGCCTTCACCAGCACAGGCTTTGACTGTCACACCTCGCCTGTGTTTAGCCCTGCTAACCCCG
AGAGCTCCATAGAAGACTGCTTGGCCCATCTTGGAGAAAGAGTGTCACAAGACCTGAAGGAGCCTTTGCA
GAAAGCATTGCAGACGATCCTCAGCCAGCCAGTGACATATGAGGCATATCGTGAATGTACAGTGGAGACT
GCAGTCCATGCCAGCGGATGGAATAAGCTTTTGGTGCCTCTAGTTTTGCTACAACACCTGCTTTTGGAAT
TGACGCGCCGTGGTCAAGAGCCTTTGCGTATGCTGCTCCAGTTCGGTGTGATGTACCTGGAGGAGCACGC
CGCAGAGTTCATCATTCAGCAAGGTGGCTGGGGCAGTGTCTTTAGTCTTGAGCCTGAGGAGGAGGAATAC
CCGGGGATCATTGCGGAAGATAGCAATGACATTTATATACTGCCCAGTGACAACTCCGGACAAGTTAGTC
CCCCTGAATCCCCGACAGTGACAACATCCTGGCAGTCGGAGAGCCTTCCCGTCTCACTGTCTGCTAGCCA
GAGCTGGCACACAGAAAGCCTCCCGGTGTCGCTCGGGCCCGAGTCCTGGCAGCAGATTGCAATGGACCCT
GAAGAAGTGAAGAGCTTAGACAGCAGCGGGGCTGGGGAGAAGAGTGAGAACAACTCGTCCAACTCTGACA
TCGTGCACGTGGAGAAGGAGGAGGTGCCAGAGGAGGCCTTCCCGGGAGCGGCTGCTCCCTTGCTCACACA
GGTCCCTACCGTGGAGGCCCCAGAAATGATGAGAGCTGAGAAAACGAGCCCCACTCCGTCTGTGTTTGTG
GAGCTTGGTGAGGAGGAGCTGGAAGCAGTAACAGCGAGACCCGAGGCTGTGGAGAGGGCGGAGGGGGCCG
CTCAGCTGAGTGAGGAGAGAGCCGGGAGCAGGAAAAAGAGCCACACTGGGGAGGCCGCCGCTGTCAGGGG
GGCAAAGAGTGGCCTGCCCGCCGAGGGCAAGGCCGTACTGCTCTTTGGTGGGGCTGCTGCGGTGGCCATC
CTGGCAGTGGCTGTTGGAGTTGCACTGGCTTTAAGAAGAAAGTAA

Translation (434 aa):
MASSTTASLGFHYETKYVVLSYLGLLSQEKQQGPSPPGVQLDVAPQSLNPEVLLKLKSEIEEELKTLDKE
VSEAFTSTGFDCHTSPVFSPANPESSIEDCLAHLGERVSQDLKEPLQKALQTILSQPVTYEAYRECTVET
AVHASGWNKLLVPLVLLQHLLLELTRRGQEPLRMLLQFGVMYLEEHAAEFIIQQGGWGSVFSLEPEEEEY
PGIIAEDSNDIYILPSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQIAMDP
EEVKSLDSSGAGEKSENNSSNSDIVHVEKEEVPEEAFPGAAAPLLTQVPTVEAPEMMRAEKTSPTPSVFV
ELGEEELEAVTARPEAVERAEGAAQLSEERAGSRKKSHTGEAAAVRGAKSGLPAEGKAVLLFGGAAAVAI
LAVAVGVALALRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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