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Report for CCDS20698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20698.1 Public Mus musculus 6 Sspn 23 108 98 CCDS HistoryNCBI Gene:16651Re-query CCDS DB by CCDS ID:20698.1Re-query CCDS DB by GeneID:16651See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032383.13 ENSMUSP00000032383.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032383.13Link to Ensembl Protein Viewer:ENSMUSP00000032383.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032383Re-query CCDS DB by Protein ID:ENSMUSP00000032383
Original member Current member NCBI NM_010656.3 NP_034786.1 Accepted alive Link to Nucleotide Sequence:NM_010656.3Link to Protein Sequence:NP_034786.1Re-query CCDS DB by Nucleotide ID:NM_010656Re-query CCDS DB by Protein ID:NP_034786Link to BLAST:NP_034786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034786.1 216 Q62147 216 99.537% 0 1

Chromosomal Locations for CCDS 20698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145934174 145934371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145955595 145955681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145961130 145961495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGGGCGCAAGCCGAGCCCCAGGGCTCAGGAGCTGCCTGAGGAGGAGGCGCGGACCTGCTGTGGCTGCC
GCTTCCCGCTGCTGCTGGCACTGCTGCAGCTGGCGTTGGGCATCGCGGTGACCGTGCTGGGCTTCCTCAT
GGCGAGCATCAGCCCCTCCCTGCTAGTCAGAGATACTCCGTTCTGGGCTGGGATCATTGTCTGCGTGGTG
GCTTACCTTGGACTGTTCATGCTTTGTGTCTCATACCAAGTTGACGAGAGGACATGTGTCCAGTTTTCTA
TGAAGGTATTCTACTTCCTGTTGAGTGCCCTCGGCCTGATGGTCTGCATGCTGGCTGTGGCCTTTGCCGC
CCACCACTACTCCCTGCTTGCGCAGTTTACCTGCGAGACCTCCCTGGATTCTTGCCAGTGCAAGCTGCCT
TCCTCGGAGCCGCTCAGCAGGGCCTTTGTTTACAGGGATGTGACTGACTGTACCAGCGTCACTGGCACTT
TCAAATTGTTCTTAATCATCCAGATGGTCCTAAACCTGGTCTGTGGCCTCGTGTGCTTGCTGGCTTGCTT
TGTGATGTGGAAACACAGGTACCAGGTCTTTTATGTGGGTGTTGGGCTGCGCTCCCTGATGGCTTCTGAT
GGCCAGCTACCAAAGGCCTAA

Translation (216 aa):
MGRKPSPRAQELPEEEARTCCGCRFPLLLALLQLALGIAVTVLGFLMASISPSLLVRDTPFWAGIIVCVV
AYLGLFMLCVSYQVDERTCVQFSMKVFYFLLSALGLMVCMLAVAFAAHHYSLLAQFTCETSLDSCQCKLP
SSEPLSRAFVYRDVTDCTSVTGTFKLFLIIQMVLNLVCGLVCLLACFVMWKHRYQVFYVGVGLRSLMASD
GQLPKA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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