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Report for CCDS20759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20759.1 Public Mus musculus 7 Rfpl4 23 108 98 CCDS HistoryNCBI Gene:192658Re-query CCDS DB by CCDS ID:20759.1Re-query CCDS DB by GeneID:192658See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045215.8 ENSMUSP00000039519.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045215.8Link to Ensembl Protein Viewer:ENSMUSP00000039519.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045215Re-query CCDS DB by Protein ID:ENSMUSP00000039519
Original member Current member EBI ENSMUST00000179971.7 ENSMUSP00000136497.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179971.7Link to Ensembl Protein Viewer:ENSMUSP00000136497.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179971Re-query CCDS DB by Protein ID:ENSMUSP00000136497
Original member Current member NCBI NM_001145013.1 NP_001138485.1 Accepted alive Link to Nucleotide Sequence:NM_001145013.1Link to Protein Sequence:NP_001138485.1Re-query CCDS DB by Nucleotide ID:NM_001145013Re-query CCDS DB by Protein ID:NP_001138485Link to BLAST:NP_001138485.1
Original member Current member NCBI NM_138954.3 NP_620404.1 Accepted alive Link to Nucleotide Sequence:NM_138954.3Link to Protein Sequence:NP_620404.1Re-query CCDS DB by Nucleotide ID:NM_138954Re-query CCDS DB by Protein ID:NP_620404Link to BLAST:NP_620404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138485.1 287 Q8VH31 287 100% 0 0
NP_620404.1 287 Q8VH31 287 100% 0 0

Chromosomal Locations for CCDS 20759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5110317 5110894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5115284 5115569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCTCATCTCTTTAAAGAGAAAAGTAACTGTTATTTCTGCTTCCGGTGTCTGGAAAGCCCTGTGTACT
TGAACTGTGGATACATCTGCTGCCTCAAGTGCCTTGACTCACTAGAGAAAAGTCCTGAAGGGGACGGTGT
ACTGTGCCCCACTTGCTCTGTTGTCTCTTTGAAAGAAGACATCATACATGCTAAACAGTTAGGGGCCCTG
GTTACCAAGATCAAAAACCTAGAGCCACAGCTGAATTTTATTCTGACAATGGACCAAGGTATGAAGATAT
TTCAAGTAACCATGACCTTGGATGTGGACACAGCCCAGAACCACCTCATCATCTCTGATGACCTGCTGAG
TGTCTACTATACGCCTCAGAAGCAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGTC
CTGGGCTCTTCCCGGTTCACTTCAGGCCGCCATTACTGGGAGGTAGTGGTGGGAACCAGCAAAGAATGGG
ATATAGGCATTTGCAAAGAGTCCATTAATCGAAAAAAGGCTATTCATTTGTCTGAAAAAAATGGCTTCTG
GACCGTGGGTGTGAGGGCAAAAAAGGTCTATTCTGCCAGCACTGACCCCTTGACTGTGCTGCGTGTGAAC
CCTCGGCTACGTAGAGTGGGCATTTTCCTTGACATGCTAGAGAAAAGTGTTTCTTTCTGGGACCTTAGCG
ATGGCTCCCATATCTATACATTCCTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGC
AAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGTATCTGTCCTGTGACAAATCCAGGCATTTTC
GGAATTCCAGTTAACCCCCAATAA

Translation (287 aa):
MAHLFKEKSNCYFCFRCLESPVYLNCGYICCLKCLDSLEKSPEGDGVLCPTCSVVSLKEDIIHAKQLGAL
VTKIKNLEPQLNFILTMDQGMKIFQVTMTLDVDTAQNHLIISDDLLSVYYTPQKQARKKCAERFHPSPCV
LGSSRFTSGRHYWEVVVGTSKEWDIGICKESINRKKAIHLSEKNGFWTVGVRAKKVYSASTDPLTVLRVN
PRLRRVGIFLDMLEKSVSFWDLSDGSHIYTFLEIPDTDPFRPFFSPASSYPDGDQEQVLSICPVTNPGIF
GIPVNPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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