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Report for CCDS2080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2080.1 Public Homo sapiens 2 CCDC138 24 110 108 CCDS HistoryNCBI Gene:165055Re-query CCDS DB by CCDS ID:2080.1Re-query CCDS DB by GeneID:165055See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295124.9 ENSP00000295124.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295124.9Link to Ensembl Protein Viewer:ENSP00000295124.4Re-query CCDS DB by Nucleotide ID:ENST00000295124Re-query CCDS DB by Protein ID:ENSP00000295124
Original member Current member NCBI NM_144978.3 NP_659415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144978.3Link to Protein Sequence:NP_659415.1Re-query CCDS DB by Nucleotide ID:NM_144978Re-query CCDS DB by Protein ID:NP_659415Link to BLAST:NP_659415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659415.1 665 Q96M89-1 665 100% 0 0

Chromosomal Locations for CCDS 2080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 108786823 108786915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108788032 108788089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108788852 108788966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108791675 108791802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108794540 108794721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108798428 108798586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108804889 108805008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108812631 108812708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108812820 108812927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108815941 108816105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108839185 108839301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108846738 108846930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108856794 108856970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108873451 108873589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108876088 108876253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGAGCCGAGGGTCGTCAAGCCACCGGGGCAGGATTTAGTAGTGGAGAGTCTCAAAAGCCGCTACGGAC
TCGGGGGCAGCTGCCCCGACGAGTATGATTTTTCAAATTTTTATCAGTCTAAGTATAAGAGAAGAACTCT
AACCTCCCCAGGTGATTTGGATATCTACTCTGGAGATAAAGTTGGTTCATCGTTAAAATATTCTGATGAA
AGCAAGCATTGTAGAACACCATTGGGCAGCTTATTCAAGCACGTAAATGTGAATTGCCTAGATGATGAAC
TGGATTCTTTCCATGATTTGAAGAAACAGGAAACAGAAGAAGAGTTAATTGAAAATGATTATAGAGTTAG
TACCTCGAAAATAACCAAGCAGTCTTTTAAAGAAATAGAAAAAGTTGCCTTGCCAACTAATACGACCTCA
TCGAGACCTCGGACTGAGTGTTGTAGTGATGCAGGTGACTCTCCTTTGAAACCTGTCAGCTGTCCAAAAT
CTAAAGCATCAGACAAGCGGAGTTTACTTCCACATCAGATCAGTCAGATATATGACGAATTATTTCAGAT
ACATCTGAAATTGCAGTGTGAAACTGCAGCACAACAGAAATTTGCTGAAGAACTTCAAAAGCGAGAACGT
TTTTTACTTGAAAGAGAACAACTGCTTTTCAGACATGAAAATGCCTTGAGTAAAATTAAAGGTGTTGAAG
AAGAGGTTCTTACAAGATTTCAAATTATAAAAGAGCAGCATGATGCAGAAGTTGAACACTTAACCGAAGT
TCTTAAGGAAAAGAATAAAGAAACCAAGAGACTGAGGTCCTCTTTTGATGCATTGAAAGAATTGAATGAT
ACCTTAAAAAAACAGTTAAATGAAGCAAGTGAAGAAAACAGGAAGATAGACATTCAGGCTAAAAGAGTTC
AAGCTCGTTTAGATAATTTACAGAGGAAGTACGAGTTTATGACAATACAGAGATTGAAAGGAAGTTCCCA
TGCTGTTCATGAAATGAAAAGTTTAAAACAAGAAAAAGCACCAGTTTCAAAAACTTACAAGGTACCACTT
AATGGGCAAGTTTATGAACTTTTAACTGTCTTCATGGACTGGATTTCGGATCATCATCTTAGCAAAGTGA
AACATGAAGAATCTGGAATGGATGGTAAAAAACCACAACTCAAATTTGCTTCCCAGAGAAATGATATTCA
GGAGAAGTGTGTAAAGCTTTTGCCTCTAATGACAGAGCAGCTACAGTGGATGCCATTTGTGAATATCAAA
CTTCACGAGCCTTTTGTAAAATTTATATATTGGTCCCTAAGGCAGCTAGATGCTGGAGCACAGCACTCGA
CTATGACATCAACATTGAGGAGATTGGGTGAAGACATTTTTAAAGGAGTGGTAACTAAAGGAATTCAGGA
TAATTCTCCACAGCATTCTGTGGAGAATAAACCAAAGACAGCTGCTTTCTTTAAGAGCTCCAATTTGCCA
TTGAGATTTTTATCAACCTTAATTGTTCTCAAAACAGTCACTCAAGCTGATTACCTGGCTCAGGCATTTG
ATTCTCTTTGTTTGGACTTGAAGACAGAAGAAGGAAAAACCTTGTTTTTGGAGTATCAGGCTGTTCCAGT
AATATTAAGTCATCTAAGAATATCCAGTAAAGGACTCCTGTCTAATGTTATTGATAGTTTGCTCCAGATG
ACGGTGGAATCTAAATCCTTGCAGCCTTTCCTGGAAGCCTGTAGCAACTCTTTATTTTTTCGTACTTGCT
CTGTGCTGCTTCGAGCCCCTAAGCTTGATCTTCAAATACTAGAAAAACTCAGTATTATTTTACAGAAACT
TTCCAAAATCAAGAGTAATAAGAAGCTCTTTGAACTTTTTACGATTCATCTGATGCTTCAAGAAATACAA
AGGACAACAAACCCAGAGCATGCATTTCTCTGTATTAATCTAAATTCAACTCTGTTCAATCTGGGTTTAA
CAAAATGTAACTCCCTGGTCTCCAGTGCAAGCCCTTAG

Translation (665 aa):
MEPRVVKPPGQDLVVESLKSRYGLGGSCPDEYDFSNFYQSKYKRRTLTSPGDLDIYSGDKVGSSLKYSDE
SKHCRTPLGSLFKHVNVNCLDDELDSFHDLKKQETEEELIENDYRVSTSKITKQSFKEIEKVALPTNTTS
SRPRTECCSDAGDSPLKPVSCPKSKASDKRSLLPHQISQIYDELFQIHLKLQCETAAQQKFAEELQKRER
FLLEREQLLFRHENALSKIKGVEEEVLTRFQIIKEQHDAEVEHLTEVLKEKNKETKRLRSSFDALKELND
TLKKQLNEASEENRKIDIQAKRVQARLDNLQRKYEFMTIQRLKGSSHAVHEMKSLKQEKAPVSKTYKVPL
NGQVYELLTVFMDWISDHHLSKVKHEESGMDGKKPQLKFASQRNDIQEKCVKLLPLMTEQLQWMPFVNIK
LHEPFVKFIYWSLRQLDAGAQHSTMTSTLRRLGEDIFKGVVTKGIQDNSPQHSVENKPKTAAFFKSSNLP
LRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTEEGKTLFLEYQAVPVILSHLRISSKGLLSNVIDSLLQM
TVESKSLQPFLEACSNSLFFRTCSVLLRAPKLDLQILEKLSIILQKLSKIKSNKKLFELFTIHLMLQEIQ
RTTNPEHAFLCINLNSTLFNLGLTKCNSLVSSASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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