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Report for CCDS20892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20892.1 Public Mus musculus 7 Snrpd2 23 108 98 CCDS HistoryNCBI Gene:107686Re-query CCDS DB by CCDS ID:20892.1Re-query CCDS DB by GeneID:107686See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049294.3 ENSMUSP00000037597.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049294.3Link to Ensembl Protein Viewer:ENSMUSP00000037597.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049294Re-query CCDS DB by Protein ID:ENSMUSP00000037597
Original member NCBI NM_026943.1 NP_081219.1 Updated not alive Link to Nucleotide Sequence:NM_026943.1Link to Protein Sequence:NP_081219.1Re-query CCDS DB by Nucleotide ID:NM_026943Re-query CCDS DB by Protein ID:NP_081219
Current member NCBI NM_026943.2 NP_081219.1 Accepted alive Link to Nucleotide Sequence:NM_026943.2Link to Protein Sequence:NP_081219.1Re-query CCDS DB by Nucleotide ID:NM_026943Re-query CCDS DB by Protein ID:NP_081219Link to BLAST:NP_081219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081219.1 118 P62317 118 100% 0 0

Chromosomal Locations for CCDS 20892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19149893 19149894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19151218 19151397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19152476 19152650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGAGTCTCCTCAATAAACCCAAGAGTGAGATGACCCCAGAGGAGCTGCAGAAGCGGGAGGAGGAGGAAT
TCAACACAGGTCCCCTCTCAGTGCTCACGCAGTCGGTCAAGAACAACACGCAAGTGCTCATTAACTGTCG
CAACAACAAGAAGCTGCTGGGCCGGGTGAAGGCCTTTGACAGGCACTGCAACATGGTGCTGGAAAATGTG
AAGGAGATGTGGACTGAGGTTCCCAAGAGCGGCAAGGGCAAGAAGAAATCCAAGCCTGTCAACAAGGACC
GCTACATCTCCAAGATGTTCCTGCGCGGGGACTCGGTCATCGTGGTGCTGCGGAACCCACTCATCGCTGG
CAAGTAG

Translation (118 aa):
MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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