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Report for CCDS2127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2127.1 Public Homo sapiens 2 SCTR 24 110 108 CCDS HistoryNCBI Gene:6344Re-query CCDS DB by CCDS ID:2127.1Re-query CCDS DB by GeneID:6344See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000019103.8 ENSP00000019103.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000019103.8Link to Ensembl Protein Viewer:ENSP00000019103.6Re-query CCDS DB by Nucleotide ID:ENST00000019103Re-query CCDS DB by Protein ID:ENSP00000019103
Original member Current member NCBI NM_002980.3 NP_002971.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002980.3Link to Protein Sequence:NP_002971.2Re-query CCDS DB by Nucleotide ID:NM_002980Re-query CCDS DB by Protein ID:NP_002971Link to BLAST:NP_002971.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002971.2 440 P47872 440 100% 0 0

Chromosomal Locations for CCDS 2127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119440117 119440257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119441558 119441599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119446759 119446885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119448689 119448780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119452010 119452079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119453287 119453347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119461847 119462000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119464123 119464255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119465789 119465886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119473453 119473556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119478811 119478918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119494428 119494548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119524155 119524226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCGTCCCCACCTGTCGCCGCCGCTGCAGCAGCTACTACTGCCGGTGCTGCTCGCCTGCGCCGCGCACT
CGACTGGAGCCCTTCCCCGACTATGTGACGTGCTACAAGTGCTGTGGGAAGAGCAAGACCAGTGCCTGCA
GGAACTCTCCAGAGAGCAGACAGGAGACCTGGGCACGGAGCAGCCAGTGCCAGGTTGTGAGGGGATGTGG
GACAACATAAGCTGCTGGCCCTCTTCTGTGCCGGGCCGGATGGTGGAGGTGGAATGCCCGAGATTCCTCC
GGATGCTCACCAGCAGAAATGGTTCCTTGTTCCGAAACTGCACACAGGATGGCTGGTCAGAAACCTTCCC
CAGGCCTAATCTGGCCTGTGGCGTTAATGTGAACGACTCTTCCAACGAGAAGCGGCACTCCTACCTGCTG
AAGCTGAAAGTCATGTACACCGTGGGCTACAGCTCCTCCCTGGTCATGCTCCTGGTCGCCCTTGGCATCC
TCTGTGCTTTCCGGAGGCTCCACTGCACTCGCAACTACATCCACATGCACCTGTTCGTGTCCTTCATCCT
TCGTGCCCTGTCCAACTTCATCAAGGACGCCGTGCTCTTCTCCTCAGATGATGTCACCTACTGCGATGCC
CACAGGGCGGGCTGCAAGCTGGTCATGGTGCTGTTCCAGTACTGCATCATGGCCAACTACTCCTGGCTGC
TGGTGGAAGGCCTCTACCTTCACACACTCCTCGCCATCTCCTTCTTCTCTGAAAGAAAGTACCTCCAGGG
ATTTGTGGCATTCGGATGGGGTTCTCCAGCCATTTTTGTTGCTTTGTGGGCTATTGCCAGACACTTTCTG
GAAGATGTTGGGTGCTGGGACATCAATGCCAACGCATCCATCTGGTGGATCATTCGTGGTCCTGTGATCC
TCTCCATCCTGATTAATTTCATCCTTTTCATAAACATTCTAAGAATCCTGATGAGAAAACTTAGAACCCA
AGAAACAAGAGGAAATGAAGTCAGCCATTATAAGCGCCTGGCCAGGTCCACTCTCCTGCTGATCCCCCTC
TTTGGCATCCACTACATCGTCTTCGCCTTCTCCCCAGAGGACGCTATGGAGATCCAGCTGTTTTTTGAAC
TAGCCCTTGGCTCATTCCAGGGACTGGTGGTGGCCGTCCTCTACTGCTTCCTCAATGGGGAGGTGCAGCT
GGAGGTTCAGAAGAAGTGGCAGCAATGGCACCTCCGTGAGTTCCCACTGCACCCCGTGGCCTCCTTCAGC
AACAGCACCAAGGCCAGCCACTTGGAGCAGAGCCAGGGCACCTGCAGGACCAGCATCATCTGA

Translation (440 aa):
MRPHLSPPLQQLLLPVLLACAAHSTGALPRLCDVLQVLWEEQDQCLQELSREQTGDLGTEQPVPGCEGMW
DNISCWPSSVPGRMVEVECPRFLRMLTSRNGSLFRNCTQDGWSETFPRPNLACGVNVNDSSNEKRHSYLL
KLKVMYTVGYSSSLVMLLVALGILCAFRRLHCTRNYIHMHLFVSFILRALSNFIKDAVLFSSDDVTYCDA
HRAGCKLVMVLFQYCIMANYSWLLVEGLYLHTLLAISFFSERKYLQGFVAFGWGSPAIFVALWAIARHFL
EDVGCWDINANASIWWIIRGPVILSILINFILFINILRILMRKLRTQETRGNEVSHYKRLARSTLLLIPL
FGIHYIVFAFSPEDAMEIQLFFELALGSFQGLVVAVLYCFLNGEVQLEVQKKWQQWHLREFPLHPVASFS
NSTKASHLEQSQGTCRTSII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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