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Report for CCDS21295.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21295.2 Public Mus musculus 7 Mrgpra1 23 108 98 CCDS HistoryNCBI Gene:233221Re-query CCDS DB by CCDS ID:21295.2Re-query CCDS DB by GeneID:233221See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21295.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21295.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098438.3 ENSMUSP00000129978.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098438.3Link to Ensembl Protein Viewer:ENSMUSP00000129978.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098438Re-query CCDS DB by Protein ID:ENSMUSP00000129978
Original member Current member NCBI NM_153095.2 NP_694735.2 Accepted alive Link to Nucleotide Sequence:NM_153095.2Link to Protein Sequence:NP_694735.2Re-query CCDS DB by Nucleotide ID:NM_153095Re-query CCDS DB by Protein ID:NP_694735Link to BLAST:NP_694735.2

Chromosomal Locations for CCDS 21295.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 47334934 47335918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 47354197 47354207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGGGGAAAGCAGCACCTGTGCAGGGTTTCTAGCCCTAAACACATCGGCCTCGCCAACAGCACCCACAA
CAACTAATCCAATGGACAATACCATCCCTGGAGGTATCAACATCACGATTCTGATCCCAAACTTGATGAT
CATCATCTTCGGACTGGTCGGGCTGACAGGAAATGGCATTGTGTTCTGGCTCCTGGGCTTCTGTTTGCAC
AGGAACGCCTTCTCAGTCTACATCCTAAACTTAGCTCTAGCTGACTTCTTCTTCCTCCTAGGTCACATCA
TAGATTCCATACTGCTTCTTCTCAATGTTTTCTACCCAATTACCTTTCTCTTGTGCTTTTACACGATCAT
GATGGTTCTCTATATCGCAGGCCTGAGCATGCTCAGTGCCATCAGCACTGAGCGCTGCCTGTCTGTACTG
TGCCCCATCTGGTATCACTGTCACCGCCCAGAACACACATCAACTGTCATGTGTGCTGTCATCTGGGTCC
TGTCCCTGTTGATCTGCATTCTGAATAGTTATTTCTGCGGTTTCTTAAATACCCAATATAAAAATGAAAA
TGGGTGTCTGGCATTGAGCTTCTTTACTGCTGCATACCTGATGTTTTTGTTTGTGGTCCTCTGTCTGTCC
AGCCTGGCTCTGGTGGCCAGGTTGTTCTGTGGTACTGGGCAGATAAAGCTTACCAGATTGTATGTAACCA
TTATTCTGAGCATTTTGGTTTTTCTCCTTTGCGGATTGCCCTTTGGCATCCACTGGTTTCTGTTATTCAA
GATTAAGGATGATTTTCATGTATTTGATCTTGGATTTTATCTGGCATCAGTTGTCCTGACTGCTATTAAT
AGCTGTGCCAACCCCATCATTTACTTCTTCGTGGGATCCTTCAGGCATCGGTTGAAGCACCAGACCCTCA
AAATGGTTCTCCAGAATGCACTGCAAGACACTCCTGAGACAGCCAAAATCATGGTGGAGATGTCAAGAAG
CAAATCAGAGCCATGA

Translation (331 aa):
MGESSTCAGFLALNTSASPTAPTTTNPMDNTIPGGINITILIPNLMIIIFGLVGLTGNGIVFWLLGFCLH
RNAFSVYILNLALADFFFLLGHIIDSILLLLNVFYPITFLLCFYTIMMVLYIAGLSMLSAISTERCLSVL
CPIWYHCHRPEHTSTVMCAVIWVLSLLICILNSYFCGFLNTQYKNENGCLALSFFTAAYLMFLFVVLCLS
SLALVARLFCGTGQIKLTRLYVTIILSILVFLLCGLPFGIHWFLLFKIKDDFHVFDLGFYLASVVLTAIN
SCANPIIYFFVGSFRHRLKHQTLKMVLQNALQDTPETAKIMVEMSRSKSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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