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Report for CCDS21376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21376.1 Public Mus musculus 7 Isg20 23 108 98 CCDS HistoryNCBI Gene:57444Re-query CCDS DB by CCDS ID:21376.1Re-query CCDS DB by GeneID:57444See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038142.14 ENSMUSP00000040080.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038142.14Link to Ensembl Protein Viewer:ENSMUSP00000040080.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038142Re-query CCDS DB by Protein ID:ENSMUSP00000040080
Original member Current member EBI ENSMUST00000118867.7 ENSMUSP00000112480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118867.7Link to Ensembl Protein Viewer:ENSMUSP00000112480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118867Re-query CCDS DB by Protein ID:ENSMUSP00000112480
Original member Current member EBI ENSMUST00000120331.3 ENSMUSP00000113255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120331.3Link to Ensembl Protein Viewer:ENSMUSP00000113255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120331Re-query CCDS DB by Protein ID:ENSMUSP00000113255
Original member Current member NCBI NM_001113527.1 NP_001106999.1 Accepted alive Link to Nucleotide Sequence:NM_001113527.1Link to Protein Sequence:NP_001106999.1Re-query CCDS DB by Nucleotide ID:NM_001113527Re-query CCDS DB by Protein ID:NP_001106999Link to BLAST:NP_001106999.1
Original member Current member NCBI NM_001291221.1 NP_001278150.1 Accepted alive Link to Nucleotide Sequence:NM_001291221.1Link to Protein Sequence:NP_001278150.1Re-query CCDS DB by Nucleotide ID:NM_001291221Re-query CCDS DB by Protein ID:NP_001278150Link to BLAST:NP_001278150.1
Original member Current member NCBI NM_020583.5 NP_065608.2 Accepted alive Link to Nucleotide Sequence:NM_020583.5Link to Protein Sequence:NP_065608.2Re-query CCDS DB by Nucleotide ID:NM_020583Re-query CCDS DB by Protein ID:NP_065608Link to BLAST:NP_065608.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106999.1 181 Q9JL16-2 181 100% 0 0
NP_001278150.1 181 Q9JL16-2 181 100% 0 0
NP_065608.2 181 Q9JL16-2 181 100% 0 0

Chromosomal Locations for CCDS 21376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78914347 78914574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78916533 78916733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78920046 78920162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCAGGCATCCCAGAGGTGGTGGCCATGGACTGTGAGATGGTGGGGCTTGGGCCTCAAAGGGTGAGTG
GCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGAGGG
AGAGATCACGGACTACAGAACCCAAGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGCCACGCCATTT
GGTGAAGCCAGGCTAGAGATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACG
ACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTG
GCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAG
AACATCCAGAACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCACAATGGAGCTCTACAAAA
TCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGA

Translation (181 aa):
MAGIPEVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHMVRATPF
GEARLEILQLLKGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAKLQYYSRVSLRLLCKRLLHK
NIQNNWRGHCSVEDARATMELYKISQRLRAQRGLPCPGTSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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