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Report for CCDS21398.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21398.2 Public Mus musculus 7 Crtc3 23 108 98 CCDS HistoryNCBI Gene:70461Re-query CCDS DB by CCDS ID:21398.2Re-query CCDS DB by GeneID:70461See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21398.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21398.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122255.7 ENSMUSP00000113540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122255.7Link to Ensembl Protein Viewer:ENSMUSP00000113540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122255Re-query CCDS DB by Protein ID:ENSMUSP00000113540
Original member NCBI NM_173863.2 NP_776288.2 Updated not alive Link to Nucleotide Sequence:NM_173863.2Link to Protein Sequence:NP_776288.2Re-query CCDS DB by Nucleotide ID:NM_173863Re-query CCDS DB by Protein ID:NP_776288
Current member NCBI NM_173863.3 NP_776288.2 Accepted alive Link to Nucleotide Sequence:NM_173863.3Link to Protein Sequence:NP_776288.2Re-query CCDS DB by Nucleotide ID:NM_173863Re-query CCDS DB by Protein ID:NP_776288Link to BLAST:NP_776288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776288.2 619 Q91X84-1 619 100% 0 0

Chromosomal Locations for CCDS 21398.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80589743 80589951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80590362 80590464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80592516 80592596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80592678 80592878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80595610 80595908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80598747 80598964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80604351 80604400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80605748 80605833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80609897 80609932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80616465 80616565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80618594 80618656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80620522 80620583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80629620 80629739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80677346 80677444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80688607 80688738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGCCGCCTCGCCCGGTTCGGGCAGCGCCAACCCGCGGAAGTTCAGTGAGAAGATCGCCCTGCACACGC
AGCGGCAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGTCCCGGGTTCAGTT
TCAGAAGCTTCAGCAGCTGCGCCTTACCCAGTACCACGGGGGATCCTTACCCAACGTGAGCCAGCTGCGG
AACAGCGCGCCAGAGTTCCAGCCATCACTTCATCAAGCCGATAATGTTCGTGGAACCCGCCACCATGGGC
TGGTGGAGAGGCCAGCCCGGAACCGCTTCCACCCCCTTCACCGAAGGTCTGGGGACAAGCCAGGGAGACA
GTTTGATGGGAATGCTTTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAGAGCTGGCCACGGCAACAG
CCTCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCTAACATCTGCACTTAACAGGACCAATTCTGATT
CTGCTCTTCACACGAGTGCTCTGAGCACCAAACCCCAGGACCCCTATGGAGGAGGAGGCCAGTCAGCCTG
GCCTGCCCCATACATGGGTTTCTGTGATGGTGAAAACGATGGCCATGCGGAAGTAGCCGCCTTCCCGGGT
CCGCTGAAAGAAGAGAATCTGTTAAATGTCCCGAAGCCACTGCCTAAACACCTGTGGGAGAGCAAGGAGA
TCCAGTCCCTGTCTGGGCGCCCTCGATCCTGTGATGTTGGGGGCGGCAATGCTTTCCCACATAATGGCCA
GAACACAGGCCTCTCACCGTTCCTGGGCACCCTGAACACCGGAGGGTCGTTACCAGATCTAACCAACCTC
CACTACTCAGCACCCCTGCCAGCCTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTGTGGGGA
ACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAAAGTTC
TCGAAGTAACCCTTCCATCCAAGCCACACTCAGTAAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCG
CAGCCGTCTGTGGCCAACGCCTCTGCTCTGCACCCCTCCCTCCGGCTCTTCTCCCTTAGCAACCCGTCTC
TTTCCACCACAAACCTGAGTGGCCCCTCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACGCTCTCTCC
TGGCCCTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTGCGACCAGCCCACTGAACCCGTATCCTGCC
TCCCAGATGGTGACCTCAGAGCAGAGCCCACTTTCCTTCCTGCCCACAGACGCTCAAGCCCAAGTGTCCC
CACCACCCCCTTACCCCACACCCCAGGAGCTGCCTCAGCCACTCCTACAGCAGCCCCATGCCCAGGAGCC
CCCAACTCAGCAGCCCCAGGCAGCCCCCTCCCTGCCACAGTCAGACTTCCAGCTCCTCACTGCCCAGGGC
TCAGCTTTGACCAGCTTCTTCCCGGATGTGCGCTTTGACCAACAGCCCATGAGGCCCAGCCCTGCCTTTC
CTCAGCAGGTGCCTTTGGTACAGCAGAGCCACCGAGAACCACAGGACTCATTCCACTTGAGACCAAACCC
ATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAGATACAAACAGCAACCTGTTCAAAGGC
CTTAGCGGGGGGCTGTCGGGCATGCCAGAGGTCAGCCTGGACATGGACACCCCGTTCCCTCTGGAAGAGG
AGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTCCAGCATGGGCCTGCTGGA
CCCCTCTGTGGAGGAGACGTTTCGAGCTGACCGGCTATGA

Translation (619 aa):
MAASPGSGSANPRKFSEKIALHTQRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLR
NSAPEFQPSLHQADNVRGTRHHGLVERPARNRFHPLHRRSGDKPGRQFDGNAFAASYSSQHLDESWPRQQ
PPWKEEKHPGFRLTSALNRTNSDSALHTSALSTKPQDPYGGGGQSAWPAPYMGFCDGENDGHAEVAAFPG
PLKEENLLNVPKPLPKHLWESKEIQSLSGRPRSCDVGGGNAFPHNGQNTGLSPFLGTLNTGGSLPDLTNL
HYSAPLPASLDTSDHLFGSMSVGNSVGNLPAAMTHLGIRTSSGLQSSRSNPSIQATLSKMALSSSLKCHP
QPSVANASALHPSLRLFSLSNPSLSTTNLSGPSRRRQPPVSPLTLSPGPEAHQGFSRQLSATSPLNPYPA
SQMVTSEQSPLSFLPTDAQAQVSPPPPYPTPQELPQPLLQQPHAQEPPTQQPQAAPSLPQSDFQLLTAQG
SALTSFFPDVRFDQQPMRPSPAFPQQVPLVQQSHREPQDSFHLRPNPYSSCGSFPGTILTEDTNSNLFKG
LSGGLSGMPEVSLDMDTPFPLEEELQIEPLSLDGLNMLSDSSMGLLDPSVEETFRADRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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