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Report for CCDS21492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21492.1 Public Mus musculus 7 Chrdl2 23 108 98 CCDS HistoryNCBI Gene:69121Re-query CCDS DB by CCDS ID:21492.1Re-query CCDS DB by GeneID:69121See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032977.10 ENSMUSP00000032977.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032977.10Link to Ensembl Protein Viewer:ENSMUSP00000032977.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032977Re-query CCDS DB by Protein ID:ENSMUSP00000032977
Original member Current member NCBI NM_133709.3 NP_598470.3 Accepted alive Link to Nucleotide Sequence:NM_133709.3Link to Protein Sequence:NP_598470.3Re-query CCDS DB by Nucleotide ID:NM_133709Re-query CCDS DB by Protein ID:NP_598470Link to BLAST:NP_598470.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598470.3 426 Q8VEA6-1 426 99.5305% 0 2

Chromosomal Locations for CCDS 21492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100006566 100006647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100016978 100017090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100020888 100020981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100021966 100022108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100023852 100023945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100025746 100025801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100027576 100027732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100028652 100028846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100029178 100029351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100033644 100033736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100034570 100034649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGTTCCCGGGGTGAGGATCATCCCCTCTTTGCTGGGACTCGTGATGTTCTGGCTCCCGTTGGACTCGC
AAGCACTATCCCGCTCGGGCAAAGTCTGCCTTTTCGGTGAAAAGATATATACCCCCGGCCAGAGCTGGCA
CCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGCTCTGAGAATGGACATGTGAAT
TGTTACCGCCTCCGCTGCCCACCCCTTCACTGCTCACAGCCTGTGATGGAGCCACAGCAATGCTGTCCCA
GGTGTGTGGATCCTCATGTCCCCTCTGGCCTCCGAGTTCCCCTAAAGTCCTGCCAGCTCAATGAGACCAC
ATACCAACATGGAGAGATCTTCAGTGCCCAGGAGCTGTTCCCTGCCCGCCTGTCCAACCAGTGTGTCCTG
TGTAGCTGTATTGAAGGCCACACTTACTGTGGTCTCATGACCTGTCCTGAACCCAGCTGCCCCACCACAC
TCCCTCTGCCTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGAGAGTTCCACAGAAGAAAACTT
GACACAGCTGCAGCATGGAGAGAGACATTCCCAGGATCCATGCTCGGAGAGGAGAGGCCCCAGCACGCCA
GCCCCCACCAGCCTCAGCTCCCCTCTGGGCTTCATCCCTCGCCACTTCCAGTCAGTAGGAATGGGCAGCA
CAACCATCAAGATTATCTTGAAGGAGAAACATAAAAAAGCTTGCACACACAATGGGAAGACATACTCCCA
TGGGGAGGTGTGGCACCCCACTGTGCTCTCCTTTGGCCCCATGCCCTGCATCCTGTGCACATGTATCGAT
GGCTACCAGGACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCAGTCAACCCAAGAAAGTGGCTG
GGAAGTGCTGCAAGATCTGCCCAGAGGACGAGGCGGAAGATGACCACAGTGAGGTCATTTCCACCCGGTG
TCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGCCCAGACAGCCTACACCGCTTT
GTCCTGGAGCATGAAGCCTCTGACCAGGTAGAGATGTACATTTGGAAGCTGGTGAAAGGAATCTACCACT
TGGTTCAGATCAAGAGAGTCAGGAAGCAAGATTTCCAGAAAGAGGCTCAGAACTTCCGGCTGCTCACCGG
CACCCATGAAGGTTACTGGACCGTCTTCCTAGCCCAGACTCCAGAGCTGAAAGTTACAGCCAGCCCAGAC
AAAGTGACCAAGACATTATAG

Translation (426 aa):
MVPGVRIIPSLLGLVMFWLPLDSQALSRSGKVCLFGEKIYTPGQSWHPYLEPQGTIYCVRCTCSENGHVN
CYRLRCPPLHCSQPVMEPQQCCPRCVDPHVPSGLRVPLKSCQLNETTYQHGEIFSAQELFPARLSNQCVL
CSCIEGHTYCGLMTCPEPSCPTTLPLPDSCCQTCKDRTTESSTEENLTQLQHGERHSQDPCSERRGPSTP
APTSLSSPLGFIPRHFQSVGMGSTTIKIILKEKHKKACTHNGKTYSHGEVWHPTVLSFGPMPCILCTCID
GYQDCHRVTCPTQYPCSQPKKVAGKCCKICPEDEAEDDHSEVISTRCPKVPGQFQVYTLASPSPDSLHRF
VLEHEASDQVEMYIWKLVKGIYHLVQIKRVRKQDFQKEAQNFRLLTGTHEGYWTVFLAQTPELKVTASPD
KVTKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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