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Report for CCDS21509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21509.1 Public Mus musculus 7 Stard10 23 108 98 CCDS HistoryNCBI Gene:56018Re-query CCDS DB by CCDS ID:21509.1Re-query CCDS DB by GeneID:56018See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032927.13 ENSMUSP00000032927.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032927.13Link to Ensembl Protein Viewer:ENSMUSP00000032927.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032927Re-query CCDS DB by Protein ID:ENSMUSP00000032927
Original member Current member EBI ENSMUST00000164479.8 ENSMUSP00000133002.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164479.8Link to Ensembl Protein Viewer:ENSMUSP00000133002.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164479Re-query CCDS DB by Protein ID:ENSMUSP00000133002
Original member Current member EBI ENSMUST00000210192.1 ENSMUSP00000148114.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210192.1Link to Ensembl Protein Viewer:ENSMUSP00000148114.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210192Re-query CCDS DB by Protein ID:ENSMUSP00000148114
Original member Current member NCBI NM_019990.5 NP_064374.1 Accepted alive Link to Nucleotide Sequence:NM_019990.5Link to Protein Sequence:NP_064374.1Re-query CCDS DB by Nucleotide ID:NM_019990Re-query CCDS DB by Protein ID:NP_064374Link to BLAST:NP_064374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064374.1 291 Q9JMD3 291 100% 0 0

Chromosomal Locations for CCDS 21509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101321827 101322033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101342498 101342645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101343184 101343287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101343917 101344034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101345635 101345687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101345892 101346137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGAAAAGCCAGCTGCCTCAACAGAACCCCAAGGGTCTCGGCCCGCCTTGGGCCGTGAAAGTGTCCAGG
TGCCCGATGACCAGGACTTCCGCAGTTTCCGGTCAGAGTGTGAGGCCGAGGTGGGCTGGAACCTGACCTA
CAGCAAGGCCGGCGTGTCTGTGTGGGTGCAGGCTGTGGAGATGGATCGAACTCTGCACAAGATCAAGTGT
CGGATGGAATGCTGTGACGTGCCAGCTGAGACGCTCTACGATGTCCTGCATGACATAGAATACAGAAAGA
AGTGGGACAGTAATGTCATTGAGACTTTCGACATCGCCCGCTTGACTGTCAACGCTGACGTAGGATATTA
TTCCTGGAGGTGTCCCAAGCCCCTGAAGAACCGTGATGTCATCACCCTCCGCTCCTGGCTCCCCATGGGC
GCTGATTACATCATTATGAACTACTCAGTGAAACACCCTAAATACCCACCTCGGAAAGACTTGGTCCGAG
CTGTGTCCATCCAGACGGGCTACCTCATCCAGAGCACGGGGCCCAAGAGCTGCGTCATCACCTACCTGGC
CCAAGTGGACCCCAAAGGCTCCTTACCCAAGTGGGTGGTGAATAAGTCATCTCAGTTCCTGGCCCCCAAG
GCCATGAAGAAGATGTACAAGGCCTGCATCAAGTACCCCGAGTGGAAGCAGAAACACCAGCCTCATTTCA
AGCCATGGCTGCACCCGGAGCAGAGCCCATTGCCCAGCCTGGCGCTGTCAGAGTTGTCGGTGCAACATGC
AGACTCACTGGAGAACATCGATGAGAGTGCAGTGACAGAGAGCCGCGAGGAGCGGGCAGGCGGTGCGGGA
GGAGAGGGCAGCGACGATGACACCTCGCTCACCTGA

Translation (291 aa):
MEKPAASTEPQGSRPALGRESVQVPDDQDFRSFRSECEAEVGWNLTYSKAGVSVWVQAVEMDRTLHKIKC
RMECCDVPAETLYDVLHDIEYRKKWDSNVIETFDIARLTVNADVGYYSWRCPKPLKNRDVITLRSWLPMG
ADYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLIQSTGPKSCVITYLAQVDPKGSLPKWVVNKSSQFLAPK
AMKKMYKACIKYPEWKQKHQPHFKPWLHPEQSPLPSLALSELSVQHADSLENIDESAVTESREERAGGAG
GEGSDDDTSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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