NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21631.1 Public Mus musculus 7 Or52n2 23 108 98 CCDS HistoryNCBI Gene:259100Re-query CCDS DB by CCDS ID:21631.1Re-query CCDS DB by GeneID:259100See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081116.1 ENSMUSP00000079893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081116.1Link to Ensembl Protein Viewer:ENSMUSP00000079893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081116Re-query CCDS DB by Protein ID:ENSMUSP00000079893
Original member Current member EBI ENSMUST00000214757.1 ENSMUSP00000148919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214757.1Link to Ensembl Protein Viewer:ENSMUSP00000148919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214757Re-query CCDS DB by Protein ID:ENSMUSP00000148919
Original member Current member NCBI NM_147096.1 NP_667307.1 Accepted alive Link to Nucleotide Sequence:NM_147096.1Link to Protein Sequence:NP_667307.1Re-query CCDS DB by Nucleotide ID:NM_147096Re-query CCDS DB by Protein ID:NP_667307Link to BLAST:NP_667307.1

Chromosomal Locations for CCDS 21631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104892670 104893626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTCTGGAGCCAACAGCTCCAGCCTGACTCCAGAATTCTTTATCCTGAATGGTGTTCCTGGGCTGGAAG
ATGCACATGTCTGGATCTCTCTGCCATTCTGCTTCATGTACATGATTGCTGTAGTGGGGAACTGTGGGCT
TATCTACCTCATTGGCCATGAGGAGGCTCTGCACCGGCCCATGTACTACTTCCTGGCTTTACTTTCCTTC
ACTGATGTCACCTTGTGTACAACCACAGTGCCCAATATGCTGTGTATATTCTGGTTCAATTTCAAGAAGA
TTGGATTTAATTCCTGCCTTGTCCAGATGTTCTTTGTCCACATGTTGACTGGAATGGAGTCTGGTGTGCT
CATGCTCATGGCCCTGGACCGCTATGTAGCCATCTGCTATCCTCTACGATATACTACCATCCTCACAAAC
CCTGTGATTGCCAAGGCTGGTCTTGCAACATTCTTAAGGAGTGTAATGCTCATCTTTCCATTCACTCTCC
TCACCAAGCGCTTGCCCTATTGCAGAGGCAGTCTTATCCCCCACACTTACTGTGACCACATGTCTGTGGC
CAAGGTATCCTGTGGCAATGCCAAGGTCAATGCAATCTATGGCCTCATGGTTGCTCTATTGATTGGTGTG
TTTGACATTTGTTGTATCTCTGTGTCTTACACTATGATATTGAGGGCAGTGGTGAGCCTGTCCTCTGCTG
ATGCTCGTCACAAGGCCTTCAGCACCTGTACATCTCACATCTGTGCTATTGTGATCACTTATGTGCCTGC
CTTTTTTACTTTTTTCACTCATCGTTTTGGAGGACACACTATTCCCCACCATGTCCACATCATAGTGGCT
AACCTCTACCTGCTACTGCCCCCTACCATGAACCCAATTGTTTATGGAGTCAAGACCAAGCAGATTCGGG
AAAGTGTAATCAAGTTTTTACTTGGAGATAAAATGGGCATTACCTAG

Translation (318 aa):
MSGANSSSLTPEFFILNGVPGLEDAHVWISLPFCFMYMIAVVGNCGLIYLIGHEEALHRPMYYFLALLSF
TDVTLCTTTVPNMLCIFWFNFKKIGFNSCLVQMFFVHMLTGMESGVLMLMALDRYVAICYPLRYTTILTN
PVIAKAGLATFLRSVMLIFPFTLLTKRLPYCRGSLIPHTYCDHMSVAKVSCGNAKVNAIYGLMVALLIGV
FDICCISVSYTMILRAVVSLSSADARHKAFSTCTSHICAIVITYVPAFFTFFTHRFGGHTIPHHVHIIVA
NLYLLLPPTMNPIVYGVKTKQIRESVIKFLLGDKMGIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH