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Report for CCDS21645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21645.1 Public Mus musculus 7 Or52x1 23 108 98 CCDS HistoryNCBI Gene:259072Re-query CCDS DB by CCDS ID:21645.1Re-query CCDS DB by GeneID:259072See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050157.2 ENSMUSP00000049601.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050157.2Link to Ensembl Protein Viewer:ENSMUSP00000049601.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000050157Re-query CCDS DB by Protein ID:ENSMUSP00000049601
Original member Current member EBI ENSMUST00000216613.1 ENSMUSP00000148898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216613.1Link to Ensembl Protein Viewer:ENSMUSP00000148898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216613Re-query CCDS DB by Protein ID:ENSMUSP00000148898
Original member Current member EBI ENSMUST00000216143.1 ENSMUSP00000149307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216143.1Link to Ensembl Protein Viewer:ENSMUSP00000149307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216143Re-query CCDS DB by Protein ID:ENSMUSP00000149307
Original member Current member EBI ENSMUST00000214147.1 ENSMUSP00000150746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214147.1Link to Ensembl Protein Viewer:ENSMUSP00000150746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214147Re-query CCDS DB by Protein ID:ENSMUSP00000150746
Original member Current member NCBI NM_147069.1 NP_667280.1 Accepted alive Link to Nucleotide Sequence:NM_147069.1Link to Protein Sequence:NP_667280.1Re-query CCDS DB by Nucleotide ID:NM_147069Re-query CCDS DB by Protein ID:NP_667280Link to BLAST:NP_667280.1

Chromosomal Locations for CCDS 21645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105203388 105204341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGATTTTTTCTAATAATTCTCATCTCCTTCCACATACTTTCTTCTTGACTGGCATCCCAGGACTGACTG
CTGCCCATGTTTGGATATCCCTTCCCTTCTGCTTCATGTTTGTCCTGTCACTAACTGGGAATGCAGTCCT
GCTTTCTCTCATCTGGATAGAACACAGGCTCCACCAGCCCATGTTTTTGTTTCTTGCAATGCTCTCTTTT
GTTGATCTGGTCCTCTCCCTTTCCACTCTGCCCAAGATGCTGGCTATTTTCTGGTTTGGTGCCACAGCCA
TCAGCTCCTATGCCTGTCTGTCCCAAATGTTCCTCATCCATGCATTCTCTGCCATGGAGTCAGGGGTGCT
GGTGGCCATGGCCTTGGACCGATTTGTGGCTATCTGTAACCCATTGCATTATGCAACCATCCTTACGCCT
GAAGTTGTTGCCAAGATTGGAGGCCTGGTGGCACTGCGAGGTGTGGGTTTAACTATCTTCTTTCCAAGCC
TGGCTTGTCGACTGTCTTATTGTGGTTCACACACAATTGCTTACACTTACTGTGAACACATGTCCGTGGT
GAAGCTGGCTTGTGGGGCCATAACTGTGGACAGTCTCTATGCTTTTGCTGTGGCAATCTTTCTTGGTGTG
GGGGATATGGCCTTTATTGCCTACTCTTATGGACAGATTGTGAAGACAGTGATGCGTTTTCCTTCTCCAG
AGGCACGTGGCAAAGCAGGAAGTACATGCACAGCCCATGTCTGTGTCATCCTCTTCTTCTATGGACCTGG
CTTTCTTTCTGTGGTCATGCAGCGCTTTGGGCCATCCACAGCTTCTGCTGCCAAGGTCATCCTTGCCAAT
CTCTACTTGCTTTTTCCCCCTGCTTTGGACCCCATTGTATATGGGGTTAAGACCAAACAGATCAGAGAGT
GTCTGTTCACAATTATAGGTTCCAAGAAGATTGAACCCACTTGA

Translation (317 aa):
MIFSNNSHLLPHTFFLTGIPGLTAAHVWISLPFCFMFVLSLTGNAVLLSLIWIEHRLHQPMFLFLAMLSF
VDLVLSLSTLPKMLAIFWFGATAISSYACLSQMFLIHAFSAMESGVLVAMALDRFVAICNPLHYATILTP
EVVAKIGGLVALRGVGLTIFFPSLACRLSYCGSHTIAYTYCEHMSVVKLACGAITVDSLYAFAVAIFLGV
GDMAFIAYSYGQIVKTVMRFPSPEARGKAGSTCTAHVCVILFFYGPGFLSVVMQRFGPSTASAAKVILAN
LYLLFPPALDPIVYGVKTKQIRECLFTIIGSKKIEPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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