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Report for CCDS21823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21823.1 Public Mus musculus 7 Il21r 23 108 98 CCDS HistoryNCBI Gene:60504Re-query CCDS DB by CCDS ID:21823.1Re-query CCDS DB by GeneID:60504See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033000.7 ENSMUSP00000033000.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033000.7Link to Ensembl Protein Viewer:ENSMUSP00000033000.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033000Re-query CCDS DB by Protein ID:ENSMUSP00000033000
Original member Current member NCBI NM_021887.2 NP_068687.1 Accepted alive Link to Nucleotide Sequence:NM_021887.2Link to Protein Sequence:NP_068687.1Re-query CCDS DB by Nucleotide ID:NM_021887Re-query CCDS DB by Protein ID:NP_068687Link to BLAST:NP_068687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068687.1 529 Q9JHX3 529 100% 0 0

Chromosomal Locations for CCDS 21823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 125622882 125622930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125625265 125625367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125626883 125627082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125628044 125628198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125628866 125629043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125629738 125629834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125630705 125630789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125632269 125632991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGCCCCGGGGCCCAGTGGCTGCCTTACTCCTGCTGATTCTCCATGGAGCTTGGAGCTGCCTGGACCTCA
CTTGCTACACTGACTACCTCTGGACCATCACCTGTGTCCTGGAGACACGGAGCCCCAACCCCAGCATACT
CAGTCTCACCTGGCAAGATGAATATGAGGAACTTCAGGACCAAGAGACCTTCTGCAGCCTACACAGGTCT
GGCCACAACACCACACATATATGGTACACGTGCCATATGCGCTTGTCTCAATTCCTGTCCGATGAAGTTT
TCATTGTCAATGTGACGGACCAGTCTGGCAACAACTCCCAAGAGTGTGGCAGCTTTGTCCTGGCTGAGAG
CATCAAACCAGCTCCCCCCTTGAACGTGACTGTGGCCTTCTCAGGACGCTATGATATCTCCTGGGACTCA
GCTTATGACGAACCCTCCAACTACGTGCTGAGGGGCAAGCTACAATATGAGCTGCAGTATCGGAACCTCA
GAGACCCCTATGCTGTGAGGCCGGTGACCAAGCTGATCTCAGTGGACTCAAGAAACGTCTCTCTTCTCCC
TGAAGAGTTCCACAAAGATTCTAGCTACCAGCTGCAGGTGCGGGCAGCGCCTCAGCCAGGCACTTCATTC
AGGGGGACCTGGAGTGAGTGGAGTGACCCCGTCATCTTTCAGACCCAGGCTGGGGAGCCCGAGGCAGGCT
GGGACCCTCACATGCTGCTGCTCCTGGCTGTCTTGATCATTGTCCTGGTTTTCATGGGTCTGAAGATCCA
CCTGCCTTGGAGGCTATGGAAAAAGATATGGGCACCAGTGCCCACCCCTGAGAGTTTCTTCCAGCCCCTG
TACAGGGAGCACAGCGGGAACTTCAAGAAATGGGTTAATACCCCTTTCACGGCCTCCAGCATAGAGTTGG
TGCCACAGAGTTCCACAACAACATCAGCCTTACATCTGTCATTGTATCCAGCCAAGGAGAAGAAGTTCCC
GGGGCTGCCGGGTCTGGAAGAGCAACTGGAGTGTGATGGAATGTCTGAGCCTGGTCACTGGTGCATAATC
CCCTTGGCAGCTGGCCAAGCGGTCTCAGCCTACAGTGAGGAGAGAGACCGGCCATATGGTCTGGTGTCCA
TTGACACAGTGACTGTGGGAGATGCAGAGGGCCTGTGTGTCTGGCCCTGTAGCTGTGAGGATGATGGCTA
TCCAGCCATGAACCTGGATGCTGGCCGAGAGTCTGGCCCTAATTCAGAGGATCTGCTCTTGGTCACAGAC
CCTGCTTTTCTGTCTTGCGGCTGTGTCTCAGGTAGTGGTCTCAGGCTTGGAGGCTCCCCAGGCAGCCTAC
TGGACAGGTTGAGGCTGTCATTTGCAAAGGAAGGGGACTGGACAGCAGACCCAACCTGGAGAACTGGGTC
CCCAGGAGGGGGCTCTGAGAGTGAAGCAGGTTCCCCCCCTGGTCTGGACATGGACACATTTGACAGTGGC
TTTGCAGGTTCAGACTGTGGCAGCCCCGTGGAGACTGATGAAGGACCCCCTCGAAGCTATCTCCGCCAGT
GGGTGGTCAGGACCCCTCCACCTGTGGACAGTGGAGCCCAGAGCAGCTAG

Translation (529 aa):
MPRGPVAALLLLILHGAWSCLDLTCYTDYLWTITCVLETRSPNPSILSLTWQDEYEELQDQETFCSLHRS
GHNTTHIWYTCHMRLSQFLSDEVFIVNVTDQSGNNSQECGSFVLAESIKPAPPLNVTVAFSGRYDISWDS
AYDEPSNYVLRGKLQYELQYRNLRDPYAVRPVTKLISVDSRNVSLLPEEFHKDSSYQLQVRAAPQPGTSF
RGTWSEWSDPVIFQTQAGEPEAGWDPHMLLLLAVLIIVLVFMGLKIHLPWRLWKKIWAPVPTPESFFQPL
YREHSGNFKKWVNTPFTASSIELVPQSSTTTSALHLSLYPAKEKKFPGLPGLEEQLECDGMSEPGHWCII
PLAAGQAVSAYSEERDRPYGLVSIDTVTVGDAEGLCVWPCSCEDDGYPAMNLDAGRESGPNSEDLLLVTD
PAFLSCGCVSGSGLRLGGSPGSLLDRLRLSFAKEGDWTADPTWRTGSPGGGSESEAGSPPGLDMDTFDSG
FAGSDCGSPVETDEGPPRSYLRQWVVRTPPPVDSGAQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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