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Report for CCDS21922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21922.1 Public Mus musculus 7 Chst15 23 108 98 CCDS HistoryNCBI Gene:77590Re-query CCDS DB by CCDS ID:21922.1Re-query CCDS DB by GeneID:77590See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077472.9 ENSMUSP00000076682.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077472.9Link to Ensembl Protein Viewer:ENSMUSP00000076682.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077472Re-query CCDS DB by Protein ID:ENSMUSP00000076682
Original member Current member EBI ENSMUST00000080215.5 ENSMUSP00000079105.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080215.5Link to Ensembl Protein Viewer:ENSMUSP00000079105.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080215Re-query CCDS DB by Protein ID:ENSMUSP00000079105
Original member Current member NCBI NM_001360768.1 NP_001347697.1 Accepted alive Link to Nucleotide Sequence:NM_001360768.1Link to Protein Sequence:NP_001347697.1Re-query CCDS DB by Nucleotide ID:NM_001360768Re-query CCDS DB by Protein ID:NP_001347697Link to BLAST:NP_001347697.1
Original member Current member NCBI NM_029935.6 NP_084211.2 Accepted alive Link to Nucleotide Sequence:NM_029935.6Link to Protein Sequence:NP_084211.2Re-query CCDS DB by Nucleotide ID:NM_029935Re-query CCDS DB by Protein ID:NP_084211Link to BLAST:NP_084211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347697.1 561 Q91XQ5 561 100% 0 0
NP_084211.2 561 Q91XQ5 561 100% 0 0

Chromosomal Locations for CCDS 21922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132238274 132238464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132241417 132241564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132247864 132248020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132262683 132262839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132266657 132266803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132268919 132269258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132270005 132270550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGAGGCATTGCATTAATTGCTGCGTCCAGCTGTTCCCCGAAGACACACACAAACAGCAAGTTGCCTGCC
AAGGAGGCCCCCATCACAGTCATCAGGCGTGCCCCACTTGCAAAGGAGAAAACAAAATTCTGTTTCGTGT
GGACAGTAAGCAGATGAACTTGCTTGCTGTTCTCGAAGTGAGGACTGAGGGCAATGAAAACTGGGGTGGG
TTTTTGCGCTTCAGGAAGGGGAAGCGATGTAGCCTGGTCTTTGGATTGATAATAATGACCTTGGTGATGG
CTTCTTACATCCTTTCCGGGGCTCATCAGGAACTTCTGATTTCCTCCCCTTTCCATTATGGGGGCTTTCC
CAGCAACCCCAGCGTGATGGATGGTGAGAACCCCAGTGATGTGAAAGAGCATCACTACCAGCCTTCTGTA
AATAACATCTCCTATGTAAAGGACTATCCGAGCATTAAACTGATTATCGACAGCATTGCTGCCAGGATTG
AGTTCACAACCAGGCAGCTCCCGGACTTACAAGATCTCAAGAGACAAGAGTTGCATATGTTTTCTGTAAT
CCCCAGCAAATTCCTCCCGACTAGCAAGAGCCCTTGTTGGTATGAGGAGTTCTCGGGCAGGAACACCACT
GACCCCTACCTGACCAATTCCTACGTGCTCTACTCCAAGCGGTTCCGCTCTACCTTTGACGCTCTGCGCA
AGGTTTTCTGGGGCCACCTGTCCCACGTGCAGGGCAAGCACTTCCGCCTGCGCTGCCTGCCCCACTTCTA
CATCATTGGGCAGCCCAAGTGTGGAACCACTGACCTGTACGACCGCCTCCGGCTGCATCCAGAAGTGAAA
TTCTCAGCCATCAAGGAGCCGCACTGGTGGACCCGGAAGCGCTTTGGAATTGTCCGCCTGCGGGACGGAC
TACGAGACCGCTACCCTGTGGAAGATTACCTGGACCTCTTTGACTTGGCTGCACACCAGATCCATCAAGG
ACTGCAGGCTGCCTCTGCAGAGCAGCCCAGCAAGATGAATAAGATCATTATTGGAGAGGCCAGCGCCTCT
ACAATGTGGGATAACAATGCCTGGACCTTCTTCTATGACAACAGCACAGACGGCGAGCCACCATTCCTGA
CCCAAGACTTCATCCATGCCTTTCAACCAGAAGCCAAGCTCATTGTTATGCTCAGGGATCCTGTGGAGAG
GTTGTACTCAGACTATCTCTACTTCGCAAGTTCCAATAAATCTGCAGATGACTTCCACGAGAAAGTGACG
GAGGCTCTGCAGCTGTTTGAAAATTGCATGCTGGATTATTCACTGCGCGCCTGCGTCTACAACAACACCC
TGAACAATGCCATGCCCGTGAGGCTCCAGGTTGGCCTGTATGCTGTGTACCTCCTGGATTGGCTGACTGT
CTTCAGTAAGGAGCAGTTCCTCATTCTCCGTCTGGAAGACCACGCATCCAATGTCAAGTATACCATGCAC
AAGGTCTTCCAGTTTCTAAACCTGGGGCCTCTGAGTGAGAAGCAGGAAGCTCTGATGACCAAGAGCCCTG
CATCCAACACACGGCGTCCTGAGGATCGTAGTCTGGGACCCATGTGGCCCATCACCCAGAAGATTCTGCG
TGAATTCTATGGGCCTTTCAACACAAGGCTGGCACAGGTCTTGGATGACGAAGCATTTGCCTGGAAGACA
ACGTGA

Translation (561 aa):
MRHCINCCVQLFPEDTHKQQVACQGGPHHSHQACPTCKGENKILFRVDSKQMNLLAVLEVRTEGNENWGG
FLRFRKGKRCSLVFGLIIMTLVMASYILSGAHQELLISSPFHYGGFPSNPSVMDGENPSDVKEHHYQPSV
NNISYVKDYPSIKLIIDSIAARIEFTTRQLPDLQDLKRQELHMFSVIPSKFLPTSKSPCWYEEFSGRNTT
DPYLTNSYVLYSKRFRSTFDALRKVFWGHLSHVQGKHFRLRCLPHFYIIGQPKCGTTDLYDRLRLHPEVK
FSAIKEPHWWTRKRFGIVRLRDGLRDRYPVEDYLDLFDLAAHQIHQGLQAASAEQPSKMNKIIIGEASAS
TMWDNNAWTFFYDNSTDGEPPFLTQDFIHAFQPEAKLIVMLRDPVERLYSDYLYFASSNKSADDFHEKVT
EALQLFENCMLDYSLRACVYNNTLNNAMPVRLQVGLYAVYLLDWLTVFSKEQFLILRLEDHASNVKYTMH
KVFQFLNLGPLSEKQEALMTKSPASNTRRPEDRSLGPMWPITQKILREFYGPFNTRLAQVLDDEAFAWKT
T


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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