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Report for CCDS21944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21944.1 Public Mus musculus 7 Ptpre 23 108 98 CCDS HistoryNCBI Gene:19267Re-query CCDS DB by CCDS ID:21944.1Re-query CCDS DB by GeneID:19267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073961.7 ENSMUSP00000073616.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073961.7Link to Ensembl Protein Viewer:ENSMUSP00000073616.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073961Re-query CCDS DB by Protein ID:ENSMUSP00000073616
Original member Current member EBI ENSMUST00000210833.1 ENSMUSP00000147313.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210833.1Link to Ensembl Protein Viewer:ENSMUSP00000147313.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210833Re-query CCDS DB by Protein ID:ENSMUSP00000147313
Original member Current member EBI ENSMUST00000211140.1 ENSMUSP00000147957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211140.1Link to Ensembl Protein Viewer:ENSMUSP00000147957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211140Re-query CCDS DB by Protein ID:ENSMUSP00000147957
Original member Current member NCBI NM_001316679.1 NP_001303608.1 Accepted alive Link to Nucleotide Sequence:NM_001316679.1Link to Protein Sequence:NP_001303608.1Re-query CCDS DB by Nucleotide ID:NM_001316679Re-query CCDS DB by Protein ID:NP_001303608Link to BLAST:NP_001303608.1
Original member Current member NCBI NM_011212.3 NP_035342.3 Accepted alive Link to Nucleotide Sequence:NM_011212.3Link to Protein Sequence:NP_035342.3Re-query CCDS DB by Nucleotide ID:NM_011212Re-query CCDS DB by Protein ID:NP_035342Link to BLAST:NP_035342.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303608.1 699 P49446-1 699 100% 0 0
NP_035342.3 699 P49446-1 699 100% 0 0

Chromosomal Locations for CCDS 21944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135643865 135643976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135651753 135651846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135652090 135652163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135653893 135654029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135659053 135659143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135663244 135663320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135663939 135663975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135664987 135665084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135667551 135667670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135668997 135669160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135669722 135669857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135670699 135670848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135671108 135671201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135672745 135672821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135674248 135674382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135678205 135678330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135679093 135679259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135681552 135681687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135683232 135683306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGGAGCCCTTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACG
ACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCCAGCC
GCTGCTCACCTGGCTGCTGCTGCCCCTGCTCCTCCTCCTGTTCCTGCTTGCAGCCTACTTCTTCAGGTTC
CGGAAGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCAAG
AGCAGCAGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTCTTCCCCATCCCCGTGGA
GCACCTGGAGGAGGAGATCCGGGTGAGATCTGCGGATGACTGCAAGCGATTCCGAGAGGAGTTCAATTCA
TTGCCATCTGGACACATACAAGGAACCTTTGAACTAGCAAATAAAGAAGAAAACAGAGAAAAAAACAGAT
ACCCCAACATTCTGCCCAATGATCATTGCAGAGTGATTTTGAGCCAAGTGGATGGAATCCCCTGCTCTGA
CTACATTAATGCTTCCTACATCGATGGCTACAAAGAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAG
CAGGAGACAGTGAATGACTTCTGGAGAATGGTCTGGGAGCAAAGGTCAGCCACCATCGTCATGTTGACGA
ACCTGAAGGAGAGGAAGGAGGAGAAGTGCTACCAGTACTGGCCAGACCAGGGCTGTTGGACCTACGGCAA
CATCCGGGTGTGTGTAGAGGACTGCGTGGTCCTGGTGGATTACACGATCCGAAAGTTCTGCATCCATCCG
CAACTCCCAGACAGCTGCAAAGCCCCGCGGCTGGTCTCACAGCTGCACTTCACCAGCTGGCCTGACTTCG
GGGTGCCGTTTACCCCCATCGGGATGCTCAAGTTCCTGAAGAAAGTGAAGACACTCAACCCCTCACATGC
TGGGCCCATTGTGGTTCACTGTAGCGCGGGCGTGGGTCGGACTGGCACCTTCATTGTGATCGATGCCATG
ATGGACATGATACACTCGGAGCAGAAGGTTGACGTCTTTGAGTTTGTGTCTAGAATCCGCAATCAGCGCC
CTCAGATGGTCCAGACGGATGTTCAGTATACATTCATCTACCAAGCCTTACTGGAATACTACCTCTATGG
GGACACAGAGCTGGATGTGTCCTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTT
GACAAGATCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACGTGCGAATCATGAAGGAGAACATGAGGA
CGGGCAACCTGCCTGCCAACATGAAGAAGGCCCGCGTCATCCAGATCATTCCATATGACTTCAATCGGGT
CATCCTGTCCATGAAAAGAGGGCAAGAGTTCACAGACTATATCAACGCATCCTTCATAGATGGCTACAGG
CAGAAGGACTACTTCATGGCCACACAGGGGCCTCTGGCTCACACAGTTGAGGACTTCTGGAGGATGGTAT
GGGAGTGGAAGTCTCACACAATCGTCATGCTGACGGAGGTGCAGGAGCGGGAACAGGATAAATGCTACCA
GTATTGGCCAACGGAGGGCTCGGTGACTCATGGAGATATAACTATAGAGATAAAGAGCGACACCCTGTCT
GAAGCAATCAGCGTACGAGACTTTCTGGTTACCTTCAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCC
GCATGGTGAGACAATTCCATTTCCATGGCTGGCCTGAGGTTGGCATCCCCGCTGAAGGCAAAGGCATGAT
TGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCCCATCACCGTGCACTGCAGC
GCGGGAGCAGGGCGGACAGGTACATTCATAGCACTCAGTAACATTTTGGAACGAGTGAAAGCCGAGGGAC
TCCTAGACGTGTTTCAAGCTGTGAAGAGCTTAAGACTTCAGAGACCACACATGGTGCAGACCCTGGAGCA
ATATGAATTCTGCTACAAAGTGGTACAAGATTTTATCGATATATTTTCTGATTATGCTAATTTCAAATGA

Translation (699 aa):
MEPFCPLLLASFSLSLARAGQGNDTTPTESNWTSTTAGPPDPGASQPLLTWLLLPLLLLLFLLAAYFFRF
RKQRKAVVSSNDKKMPNGILEEQEQQRVMLLSRSPSGPKKFFPIPVEHLEEEIRVRSADDCKRFREEFNS
LPSGHIQGTFELANKEENREKNRYPNILPNDHCRVILSQVDGIPCSDYINASYIDGYKEKNKFIAAQGPK
QETVNDFWRMVWEQRSATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIHP
QLPDSCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPSHAGPIVVHCSAGVGRTGTFIVIDAM
MDMIHSEQKVDVFEFVSRIRNQRPQMVQTDVQYTFIYQALLEYYLYGDTELDVSSLERHLQTLHSTATHF
DKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEFTDYINASFIDGYR
QKDYFMATQGPLAHTVEDFWRMVWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGDITIEIKSDTLS
EAISVRDFLVTFKQPLARQEEQVRMVRQFHFHGWPEVGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCS
AGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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