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Report for CCDS2220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2220.1 Public Homo sapiens 2 KCNH7 24 110 108 CCDS HistoryNCBI Gene:90134Re-query CCDS DB by CCDS ID:2220.1Re-query CCDS DB by GeneID:90134See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328032.8 ENSP00000333781.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328032.8Link to Ensembl Protein Viewer:ENSP00000333781.4Re-query CCDS DB by Nucleotide ID:ENST00000328032Re-query CCDS DB by Protein ID:ENSP00000333781
Original member Current member NCBI NM_173162.3 NP_775185.1 Accepted alive Link to Nucleotide Sequence:NM_173162.3Link to Protein Sequence:NP_775185.1Re-query CCDS DB by Nucleotide ID:NM_173162Re-query CCDS DB by Protein ID:NP_775185Link to BLAST:NP_775185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775185.1 732 Q9NS40-2 732 100% 0 0

Chromosomal Locations for CCDS 2220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 162423270 162423535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162435198 162435597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162446018 162446443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162504443 162504657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162517730 162518158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162536925 162537080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162836537 162836767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162838443 162838518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGCCTGTGCGCAGGGGGCATGTGGCACCACAAAATACATTTCTGGGGACCATCATTCGGAAATTTGAAG
GGCAAAATAAAAAATTTATCATTGCAAATGCCAGAGTGCAGAACTGTGCCATCATTTATTGCAACGATGG
GTTCTGTGAGATGACTGGTTTCTCCAGGCCAGATGTCATGCAAAAGCCATGCACCTGCGACTTTCTCCAT
GGACCCGAGACCAAGAGGCATGATATTGCCCAAATTGCCCAGGCATTGCTGGGGTCAGAAGAGAGGAAAG
TGGAGGTCACCTACTATCACAAAAATGGGTCCACTTTTATTTGTAACACTCACATAATTCCAGTGAAAAA
CCAAGAGGGCGTGGCTATGATGTTCATCATTAATTTTGAATATGTGACGGATAATGAAAACGCTGCCACC
CCAGAGAGGGTAAACCCAATATTACCAATCAAAACTGTAAACCGGAAATTTTTTGGGTTCAAATTCCCTG
GTCTGAGAGTTCTCACTTACAGAAAGCAGTCCTTACCACAAGAAGACCCCGATGTGGTGGTCATCGATTC
ATCTAAACACAGTGATGATTCAGTAGCCATGAAGCATTTTAAGTCTCCTACAAAAGAAAGCTGCAGCCCC
TCTGAAGCAGATGACACAAAAGCTTTGATACAGCCCAGCAAATGTTCTCCCTTGGTGAATATATCCGGAC
CTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCA
GCTGTCCCATTCCAGATCAAGGGAAAGCTTATGTAGTATACGGAGAGCATCTTCGGTCCATGATATAGAA
GGATTCGGCGTCCACCCCAAGAACATATTTAGAGACCGACATGCCAGCGAAGGGCCTTTTAATCATATCA
AGTCAAGCCTCCTGGGATCCACATCAGATTCAAACCTCAACAAATACAGCACCATTAACAAGATTCCACA
GCTCACTCTGAATTTTTCAGAGGTCAAAACTGAGAAAAAGAATTCATCACCTCCTTCTTCAGATAAAACC
ATTATTGCACCCAAGGTTAAAGATCGAACACACAATGTGACTGAGAAAGTGACCCAGGTTCTCTCTTTAG
GAGCAGATGTCCTACCTGAATACAAACTGCAGACACCACGCATCAACAAGTTTACGATATTGCACTACAG
CCCTTTCAAGGCAGTCTGGGACTGGCTTATCCTGCTGTTGGTCATATACACTGCTATATTTACTCCCTAC
TCTGCAGCCTTCCTCCTCAATGACAGAGAAGAACAGAAAAGACGAGAATGTGGCTATTCTTGTAGCCCTT
TGAATGTGGTAGACTTGATTGTGGATATTATGTTTATCATAGATATTTTAATAAACTTCAGAACAACATA
TGTAAATCAGAATGAAGAAGTGGTAAGTGATCCCGCCAAAATAGCAATACACTACTTCAAAGGCTGGTTC
CTGATTGACATGGTTGCAGCAATTCCTTTTGACTTGCTGATTTTTGGATCAGGTTCTGATGAGACAACAA
CATTAATTGGTCTTTTGAAGACTGCCCGACTCCTCCGTCTTGTGCGCGTGGCCAGGAAACTGGATCGATA
TTCAGAATATGGCGCTGCTGTTCTAATGCTCTTAATGTGCATCTTTGCCCTGATTGCTCACTGGCTGGCT
TGCATTTGGTATGCGATTGGGAATGTAGAAAGGCCTTACCTGACTGACAAAATCGGATGGTTGGATTCCT
TAGGACAGCAAATTGGGAAACGTTACAATGACAGTGACTCAAGTTCTGGACCATCCATTAAAGACAAATA
CGTCACAGCACTTTATTTTACCTTCAGCAGTTTAACCAGTGTAGGATTCGGGAATGTGTCTCCTAACACG
AATTCGGAGAAAATCTTTTCAATTTGTGTCATGTTGATTGGCTCACTAATGTATGCAAGCATTTTTGGGA
ATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTGCGAGTAAA
AGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGTCTTGAAGAATATTTCCAGCACGCA
TGGACTTACACCAATGGCATTGACATGAACATGGTATGTATGTCTGTTTTCCAAAATGAAAGTGCCGCAG
GCATTATAGTGATAGCCAAAATGGAATAA

Translation (732 aa):
MPVRRGHVAPQNTFLGTIIRKFEGQNKKFIIANARVQNCAIIYCNDGFCEMTGFSRPDVMQKPCTCDFLH
GPETKRHDIAQIAQALLGSEERKVEVTYYHKNGSTFICNTHIIPVKNQEGVAMMFIINFEYVTDNENAAT
PERVNPILPIKTVNRKFFGFKFPGLRVLTYRKQSLPQEDPDVVVIDSSKHSDDSVAMKHFKSPTKESCSP
SEADDTKALIQPSKCSPLVNISGPLDHSSPKRQWDRLYPDMLQSSSQLSHSRSRESLCSIRRASSVHDIE
GFGVHPKNIFRDRHASEGPFNHIKSSLLGSTSDSNLNKYSTINKIPQLTLNFSEVKTEKKNSSPPSSDKT
IIAPKVKDRTHNVTEKVTQVLSLGADVLPEYKLQTPRINKFTILHYSPFKAVWDWLILLLVIYTAIFTPY
SAAFLLNDREEQKRRECGYSCSPLNVVDLIVDIMFIIDILINFRTTYVNQNEEVVSDPAKIAIHYFKGWF
LIDMVAAIPFDLLIFGSGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLMLLMCIFALIAHWLA
CIWYAIGNVERPYLTDKIGWLDSLGQQIGKRYNDSDSSSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNT
NSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHA
WTYTNGIDMNMVCMSVFQNESAAGIIVIAKME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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