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Report for CCDS22267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22267.1 Public Mus musculus 8 Zfp42 23 108 98 CCDS HistoryNCBI Gene:22702Re-query CCDS DB by CCDS ID:22267.1Re-query CCDS DB by GeneID:22702See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082120.4 ENSMUSP00000080765.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082120.4Link to Ensembl Protein Viewer:ENSMUSP00000080765.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082120Re-query CCDS DB by Protein ID:ENSMUSP00000080765
Original member Current member EBI ENSMUST00000211248.1 ENSMUSP00000147606.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211248.1Link to Ensembl Protein Viewer:ENSMUSP00000147606.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211248Re-query CCDS DB by Protein ID:ENSMUSP00000147606
Original member Current member EBI ENSMUST00000209356.1 ENSMUSP00000147607.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209356.1Link to Ensembl Protein Viewer:ENSMUSP00000147607.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209356Re-query CCDS DB by Protein ID:ENSMUSP00000147607
Original member NCBI NM_009556.3 NP_033582.2 Updated not alive Link to Nucleotide Sequence:NM_009556.3Link to Protein Sequence:NP_033582.2Re-query CCDS DB by Nucleotide ID:NM_009556Re-query CCDS DB by Protein ID:NP_033582
Current member NCBI NM_009556.4 NP_033582.2 Accepted alive Link to Nucleotide Sequence:NM_009556.4Link to Protein Sequence:NP_033582.2Re-query CCDS DB by Nucleotide ID:NM_009556Re-query CCDS DB by Protein ID:NP_033582Link to BLAST:NP_033582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033582.2 288 P22227 288 99.3056% 0 2

Chromosomal Locations for CCDS 22267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 43295596 43296462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAATGAACAAAAAATGAATGAACAAATGAAGAAAACGGCAAAGACAAGTGGCCAGAAAGGGCCGGGCG
GAAGAGCCCTCGACAGACTGACCCTAAAGCAAGACGAGGCAAGGCCAGTCCAGAATACCAGAGTGGAAGC
TCCCCGTGTAACATACACCATCCGGGATGAAAGTGAGATTAGCCCCGAGACTGAGGAAGATGGCTTCCCT
GACGGATACCTAGAGTGCATCATACGAGGTGAGTTTTCCGAACCCATTCTGGAAGAGGATTTCCTTTTTA
AATCCTTCGAAAGCTTGGAGGAAGTGGAGCAAAACCTTTCTCGCCAGGTTCTGGAAGCGAGTTCCCTTCT
CGAGTCTTCTTTGGAGTACATGACAAAGGGGACGAAGCAAGAGAAGAGAGAGGTCACGCAAGAGACGCCT
CCGCTGAGGGTTGGGGCGAGCTCATTACTTGCAGGCGGCCCTGCAGAGAAGCCAGAGGGCGGTGTGTACT
GTGGTGTCTTATCGATGCTGGAGTGTCCTCAAGCCGGGTGCAAGAAGAAGCTGAGGGATAAAACCGCCCT
GAGGAAGCACATGCTTGTCCACGGGCCCCGGCGGCACGTGTGTGCAGAGTGTGGCAAAGCCTTCACGGAG
AGCTCGAAACTAAAGCGACATTTTCTGGTGCACACCGGAGAGAAGCCGTATCAGTGCACGTTCGAAGGCT
GTGGGAAGCGCTTCTCCCTGGATTTCAACTTGCGCACCCATATCCGCATCCACACCGGGGAGAGGCGCTT
TGTGTGTCCTTTTGATGGCTGCGAGAAGAGCTTTATTCAGTCAAATAACCAGAAGATTCACATCCTAACC
CACGCAAAGGCCGGGAAGAAATGCTGA

Translation (288 aa):
MNEQKMNEQMKKTAKTSGQKGPGGRALDRLTLKQDEARPVQNTRVEAPRVTYTIRDESEISPETEEDGFP
DGYLECIIRGEFSEPILEEDFLFKSFESLEEVEQNLSRQVLEASSLLESSLEYMTKGTKQEKREVTQETP
PLRVGASSLLAGGPAEKPEGGVYCGVLSMLECPQAGCKKKLRDKTALRKHMLVHGPRRHVCAECGKAFTE
SSKLKRHFLVHTGEKPYQCTFEGCGKRFSLDFNLRTHIRIHTGERRFVCPFDGCEKSFIQSNNQKIHILT
HAKAGKKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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