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Report for CCDS22406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22406.1 Public Mus musculus 8 Cyp4f18 23 108 98 CCDS HistoryNCBI Gene:72054Re-query CCDS DB by CCDS ID:22406.1Re-query CCDS DB by GeneID:72054See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003574.4 ENSMUSP00000003574.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003574.4Link to Ensembl Protein Viewer:ENSMUSP00000003574.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003574Re-query CCDS DB by Protein ID:ENSMUSP00000003574
Original member Current member NCBI NM_024444.2 NP_077764.2 Accepted alive Link to Nucleotide Sequence:NM_024444.2Link to Protein Sequence:NP_077764.2Re-query CCDS DB by Nucleotide ID:NM_024444Re-query CCDS DB by Protein ID:NP_077764Link to BLAST:NP_077764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077764.2 524 Q99N16 524 100% 0 0

Chromosomal Locations for CCDS 22406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71988560 71988737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71989060 71989142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71989707 71989771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71989861 71989994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71992832 71992961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71993165 71993231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71995886 71996156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71998174 71998295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72000875 72001002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72001088 72001141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72002388 72002532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72009044 72009241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTCACAGCTGAGCATGTCCTGGATGGGCCTGGGCCACACAGCAGCCTCTCCATGGCTGTTGCTGTTGC
TGGCTGGGGCCTCCTGCCTTCTGGCTTACATCCTTACACCGATTTATGGTGTTTTTGAGAACTCTCTTCG
CCTCCGCTGTTTCCCACAGCCTCCCAAACGAAACTGGATCTTGGGACACCTAGGCCTGATCCAGAGCTCA
GAGGAAGGACTCCTGTACATCCAGAGCCTGGTGCGAACCTTCAGGGATGCATGCTGCTGGTGGGTGGGGC
CGTTGCACCCAGTCATCCGTATATTCCACCCTGCTTTCATCAAGCCTGTGGTCTTGGCTCCAGCTTTAGT
TGCCCCCAAGGACACAGTCTTCTACCGTTTCCTGAAGCCGTGGCTAGGGGATGGCCTCTTGATGAGTACT
GGTGACAAGTGGAGCCGCCACCGTCGCATGCTGACACCTGCCTTCCATTTCAACATCCTGAAGCCCTATG
TGAAGGTTTTTAATGACAGCACCAACATCATGCACGCCAAGTGGCAGCGCCTGGCCTCCAAGGGCAGTGC
CTATTTGAACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAGTGTGTTTTCAGCTTT
GACAGCAATTGCCAGGAGAAGCCTAGTGAATACATCACTGCCATCTTAGAACTTAGTACCTTAGTGGCCA
GAAGGCACCAGAGGCTGCTTCTGCACGTGGACCTGTTTTATTACCTCACCCATGATGGGATGCGCTTCCG
GAAGGCCTGCCGTCTAGTGCATGACTTCACTGATGCTGTCATCCGGGAGCGGCGCCGCACCCTCCTTGAT
CAGGGTGGTGTTGATGTCCTCAAGGCCAAGGCCAAGGCCAAGACTTTGGACTTCATTGACGTGCTGCTGC
TGAGCAAGGATGAACATGGAAAGGCTCTGTCTGATGAGGACATCCGAGCGGAGGCTGACACCTTCATGTT
TGGAGGCCATGACACCACGGCCAGTGGACTTTCCTGGATCCTGTACAACCTGGCAAGACACCCAGAATAC
CAGGAGCGCTGCCGGCAGGAGGTGCGGGAGCTCCTGAGGGACCGCGAGCCTGAGGAGATTGAATGGGACG
ACCTGGCCCAGCTGCCATTCCTCACCATGTGCATTAAGGAGAGCCTACGGCTGCATCCTCCCGTCACTGC
AATCTCCCGATGCTGCACTCAGGACATTGTGCTCCCAGATGGTCGGGTCATCCCTAAAGGTGTCATAAGC
CGAATAAGTATTTTCGGGACACATCACAATCCAGCTGTGTGGCCAGACCCGGAGGTCTATGACCCCTTCC
GCTTTGATGCCGACAACGTCAAGGGCAGGTCACCCCTGGCTTTTATTCCCTTCTCGGCTGGGCCCAGGAA
CTGCATAGGACAGACTTTCGCCATGAGCGAGATGAAAGTAGCTCTGGCGCTGACTCTGCTGCGCTTCCGC
GTTCTGCCGGATGACAAGGAGCCCCGCAGGAAGCCGGAGCTGATCCTGCGCGCAGAAGGCGGGCTGTGGC
TGAAAGTGGAGCCGCTCAGCGCAGGCGCGCAGTGA

Translation (524 aa):
MSQLSMSWMGLGHTAASPWLLLLLAGASCLLAYILTPIYGVFENSLRLRCFPQPPKRNWILGHLGLIQSS
EEGLLYIQSLVRTFRDACCWWVGPLHPVIRIFHPAFIKPVVLAPALVAPKDTVFYRFLKPWLGDGLLMST
GDKWSRHRRMLTPAFHFNILKPYVKVFNDSTNIMHAKWQRLASKGSAYLNMFEHISLMTLDSLQKCVFSF
DSNCQEKPSEYITAILELSTLVARRHQRLLLHVDLFYYLTHDGMRFRKACRLVHDFTDAVIRERRRTLLD
QGGVDVLKAKAKAKTLDFIDVLLLSKDEHGKALSDEDIRAEADTFMFGGHDTTASGLSWILYNLARHPEY
QERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTAISRCCTQDIVLPDGRVIPKGVIS
RISIFGTHHNPAVWPDPEVYDPFRFDADNVKGRSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFR
VLPDDKEPRRKPELILRAEGGLWLKVEPLSAGAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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