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Report for CCDS22689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22689.1 Public Mus musculus 8 Vat1l 23 108 98 CCDS HistoryNCBI Gene:270097Re-query CCDS DB by CCDS ID:22689.1Re-query CCDS DB by GeneID:270097See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049509.6 ENSMUSP00000053431.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049509.6Link to Ensembl Protein Viewer:ENSMUSP00000053431.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049509Re-query CCDS DB by Protein ID:ENSMUSP00000053431
Original member NCBI NM_173016.3 NP_766604.2 Updated not alive Link to Nucleotide Sequence:NM_173016.3Link to Protein Sequence:NP_766604.2Re-query CCDS DB by Nucleotide ID:NM_173016Re-query CCDS DB by Protein ID:NP_766604
Current member NCBI NM_173016.4 NP_766604.2 Accepted alive Link to Nucleotide Sequence:NM_173016.4Link to Protein Sequence:NP_766604.2Re-query CCDS DB by Nucleotide ID:NM_173016Re-query CCDS DB by Protein ID:NP_766604Link to BLAST:NP_766604.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766604.2 417 Q80TB8 417 100% 0 0

Chromosomal Locations for CCDS 22689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 114205716 114205942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114230206 114230335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114236583 114236798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114271291 114271433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114282244 114282347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114284334 114284389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114289248 114289442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114369852 114369935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 114371647 114371745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCTAAGGAAGGCGTAGAGAAAGCGGAGGAGACCGAACAAATGATTGAGAAGGAGACCAGCAAGGAAC
CTGCTGAGGGCGGCGACGGCTCCCACCGCCTCGGGGATGCCCAGGAGATGCGCGCTGTGGTGCTGGCCGG
CTTCGGCGGACTCAACAAGCTGAGGCTCTCTAGAAAGGCCATGCCGGAGCCACAGGACGGCGAGCTCAAG
ATCCGCGTCAAAGCCTGTGGCTTAAACTTCATTGACCTGATGGTGCGACAGGGCAACATTGACAACCCTC
CCAAGACCCCCTTGGTGCCAGGATTCGAATGTTCTGGGATTGTTGAAGCTCTGGGGGACAGCGTAAAAGG
ATACGAGATTGGAGATCGTGTCATGGCATTTGTCAACTACAATGCCTGGGCTGAAGTGGTGTGTACTCCA
GTGGAGTTTGTCTACAAGATCCCAGATGACATGAGTTTCTCTGAGGCTGCTGCTTTCCCCATGAATTTCG
TCACCGCATACACGATGCTCTTTGAAATTGCCAACCTCCGCGAAGGCATGTCCGTGCTCGTGCACTCAGC
CGGCGGTGGAGTGGGTCAAGCTGTGGCTCAGCTGTGCTCTACCGTCCCCAATGTGACCGTCTTTGGAACA
GCCTCTACTTTCAAGCATGAAGCCATCAAAGATTCGGTGACCCACCTCTTTGACAGAAATGCAGACTACG
TGCAGGAAGTAAAGAGGATCTCAGCTGAAGGCGTGGACATCGTTTTGGATTGCCTGTGTGGGGACAACAC
TGGCAAGGGGCTCAGTCTCCTCAAACCTCTGGGGACCTACATTTTATATGGTTCATCCAACATGGTAACT
GGAGAGACCAAGAGTTTCTTTAGTTTTGCAAAGTCATGGTGGCAGGTGGAGAAAGTGAACCCCATCAAGC
TGTATGAAGAAAACAAAGTCATCGCCGGATTCTCACTCCTCAATCTGCTCTTCAAGCAGGGCCGCTCAGG
CCTCATCCGAGGGGTGGTAGAGAAGCTCATCGGGCTGTACAACCAGAAGAAGATCAAGCCAGTGGTGGAT
TCCTTATGGGCCCTGGAGGAGGTAAAAGAGGCCATGCAGCGCATCCACGACCGAGGGAACATCGGGAAGT
TAATTCTGGATGTGGAAAAGACGCCGACCCCGCTGATGGCCAATGACAGCACAGAGACCAGCGAGGCAGG
GGAGGAAGAAGAGGACCATGAAGGGGACAGCGAGAACAAAGAGAGGATGCCCTTCATCCAGTAA

Translation (417 aa):
MAKEGVEKAEETEQMIEKETSKEPAEGGDGSHRLGDAQEMRAVVLAGFGGLNKLRLSRKAMPEPQDGELK
IRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTP
VEFVYKIPDDMSFSEAAAFPMNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGT
ASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVT
GETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRSGLIRGVVEKLIGLYNQKKIKPVVD
SLWALEEVKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSENKERMPFIQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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