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Report for CCDS22795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22795.1 Public Mus musculus 9 Kbtbd3 23 108 98 CCDS HistoryNCBI Gene:69149Re-query CCDS DB by CCDS ID:22795.1Re-query CCDS DB by GeneID:69149See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049648.8 ENSMUSP00000050183.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049648.8Link to Ensembl Protein Viewer:ENSMUSP00000050183.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049648Re-query CCDS DB by Protein ID:ENSMUSP00000050183
Original member Current member EBI ENSMUST00000212221.1 ENSMUSP00000148445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212221.1Link to Ensembl Protein Viewer:ENSMUSP00000148445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212221Re-query CCDS DB by Protein ID:ENSMUSP00000148445
Original member NCBI NM_001164574.1 NP_001158046.1 Updated not alive Link to Nucleotide Sequence:NM_001164574.1Link to Protein Sequence:NP_001158046.1Re-query CCDS DB by Nucleotide ID:NM_001164574Re-query CCDS DB by Protein ID:NP_001158046
Current member NCBI NM_001164574.2 NP_001158046.1 Accepted alive Link to Nucleotide Sequence:NM_001164574.2Link to Protein Sequence:NP_001158046.1Re-query CCDS DB by Nucleotide ID:NM_001164574Re-query CCDS DB by Protein ID:NP_001158046Link to BLAST:NP_001158046.1
Original member NCBI NM_026962.3 NP_081238.2 Updated not alive Link to Nucleotide Sequence:NM_026962.3Link to Protein Sequence:NP_081238.2Re-query CCDS DB by Nucleotide ID:NM_026962Re-query CCDS DB by Protein ID:NP_081238
Current member NCBI NM_026962.4 NP_081238.2 Accepted alive Link to Nucleotide Sequence:NM_026962.4Link to Protein Sequence:NP_081238.2Re-query CCDS DB by Nucleotide ID:NM_026962Re-query CCDS DB by Protein ID:NP_081238Link to BLAST:NP_081238.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158046.1 607 Q8BHI4 607 100% 0 0
NP_081238.2 607 Q8BHI4 607 100% 0 0

Chromosomal Locations for CCDS 22795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4316851 4317071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4329849 4331451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGATAATTCATACAATTTAAATGAACAAAGCTCATGGAATGGAATCTCATCTGAGAAGAAAAAAAATT
ACCTTGCATCAGAAGATCATGGACAGAAAATCTTAAGTGTGCTGCAGAGTTTTAGAGAACAGAATGTCTT
TTATGACTTCAAAATAATCATGAAAGAAGAAATAATCCCATGTCATCGTTGTGTGTTGGCTGCATGCAGT
GACTTTTTCAGGGCTATGTTCGAAGTAAACATGAAAGAAAGAGATGACGGAAGTGTTACCATTACTAACT
TGTCCTCCAAAGCTGTAAAGGCATTTCTTGACTATGCCTATACGGGAAAAACAAGAATAACAGATGATAA
CGTGGAAATGTTCTTCCAGTTGTCATCCTTTCTTCAGGTTTCCTTCCTGTCCAAAGCTTGCAGTGACTTT
TTAATAAAAAGCATTAGTCTGGTCAACTGTTTGCATTTGTTATCTCTGTCAGACAGCTACGGCTCTGCCC
AGTTGTTCAGTCACACTTTATATTTTGTGCAGCATCACTTTCATTTGTTGTATAAATCCAGTGACTTTTT
AGAAATGAATTTTGGAGTGCTGCAGAAGTGTCTGGAATCAGATGAATTGAACGTACCTGAAGAAGAAATG
GTCCTAAAGGCTGTCCTCACATGGATTAAGTACAACTTAGAGTCCAGGCAAAAACACCTGCCTCACTTGA
TTACCAAAGTAAGATTACATCAGTTATCTGAGGACACACTTCAAGACTATTTGCTCAATGAAGAGTATTT
ACTCAAAAGCACAAACTGTTTTGACATAATCGTGGATGCCATTAAGTGTGTACAAGGTTCTAGTGGCCTC
TTTCCTGATGCTCGACCATCCACAACTGAAAAATATATATTCATCCATAAGACTGAGGAAAATGGAGAAA
ATCAATATACATTTTGCTATAATATTAAAACTGACTCCTGGAAAATATTGCCACAATCACATCTGATTGA
TTTGCCAGGATCTAGTCTGTCTAGCTATGGAGAGAAAATATTCTTGACAGGTGGTTGCAAAGGGAAGTGC
TGTAGAAGGATTCGACTTCATATTGCACAGTCTTACCATGATGCCACTGACCAGACCTGGTGCTACTGTC
CAGCTAAAAATGAGTTTTTCTGTGTTTCAGCCATGAAAACCCCAAGAACCATGCATACATCAGTCATGGC
TCTCAATCGATTATTTGTTATAGGCGGAAAAACTAGAGGGTCCCAGGACATTAAAAGTCTCTTAGATGTT
GAATCTTATAATCCACTGTCCAGAGAGTGGACATCAGTTAGCCCTTTACCCAGAGGCATCTATTACCCAG
AAGCCAGTGCATGCCAGAATATCATTTATGTCCTTGGATCTGAGGTAGAGATTGCCGATGCTTTCAACCC
ATCACTTGATTGCTTTTTTAAATATAATGCTACAACTGACCAGTGGTCTGAACTAGTAGCAGAGTTTGGG
CAGTTTTTTCACGCTACTTTAATTAAAGCTGTCCCAGTAAACTGCACCCTTTATATATGTGATCTTTCCA
CCTATAAGGTTTATAGTTTTTGTCCTGATACTTGTGTTTGGAAAGGAGAAGGGTCTTTTGAGTGTGCAGG
TTTTAATGCAGGTGCAATTGGAATTGAGGATAAGATTTACATATTAGGTGGAGATTATGCACCAGATGAG
ATTACAGATGAAGTGCAGGTCTACCACAGTAGTAGGTCAGAGTGGGAAGAGGTGTCACCAATGCCAAGAG
CTTTAACTGAATTTTACTGTCAGGTCATTCAGTTCAACAAATACAGGGACCCATGGTATTCAAATCATTT
CTAA

Translation (607 aa):
MDNSYNLNEQSSWNGISSEKKKNYLASEDHGQKILSVLQSFREQNVFYDFKIIMKEEIIPCHRCVLAACS
DFFRAMFEVNMKERDDGSVTITNLSSKAVKAFLDYAYTGKTRITDDNVEMFFQLSSFLQVSFLSKACSDF
LIKSISLVNCLHLLSLSDSYGSAQLFSHTLYFVQHHFHLLYKSSDFLEMNFGVLQKCLESDELNVPEEEM
VLKAVLTWIKYNLESRQKHLPHLITKVRLHQLSEDTLQDYLLNEEYLLKSTNCFDIIVDAIKCVQGSSGL
FPDARPSTTEKYIFIHKTEENGENQYTFCYNIKTDSWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKC
CRRIRLHIAQSYHDATDQTWCYCPAKNEFFCVSAMKTPRTMHTSVMALNRLFVIGGKTRGSQDIKSLLDV
ESYNPLSREWTSVSPLPRGIYYPEASACQNIIYVLGSEVEIADAFNPSLDCFFKYNATTDQWSELVAEFG
QFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAIGIEDKIYILGGDYAPDE
ITDEVQVYHSSRSEWEEVSPMPRALTEFYCQVIQFNKYRDPWYSNHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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