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Report for CCDS22853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22853.1 Public Mus musculus 9 Or7g25 23 108 98 CCDS HistoryNCBI Gene:258560Re-query CCDS DB by CCDS ID:22853.1Re-query CCDS DB by GeneID:258560See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061365.2 ENSMUSP00000051027.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061365.2Link to Ensembl Protein Viewer:ENSMUSP00000051027.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000061365Re-query CCDS DB by Protein ID:ENSMUSP00000051027
Original member Current member EBI ENSMUST00000214019.1 ENSMUSP00000150008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214019.1Link to Ensembl Protein Viewer:ENSMUSP00000150008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214019Re-query CCDS DB by Protein ID:ENSMUSP00000150008
Original member Current member EBI ENSMUST00000214267.1 ENSMUSP00000151203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214267.1Link to Ensembl Protein Viewer:ENSMUSP00000151203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214267Re-query CCDS DB by Protein ID:ENSMUSP00000151203
Original member Current member NCBI NM_146567.2 NP_666778.2 Accepted alive Link to Nucleotide Sequence:NM_146567.2Link to Protein Sequence:NP_666778.2Re-query CCDS DB by Nucleotide ID:NM_146567Re-query CCDS DB by Protein ID:NP_666778Link to BLAST:NP_666778.2

Chromosomal Locations for CCDS 22853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19248456 19249397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAAATTTCAAACCAATCAGGTATTTCTGAATTTTTTCTCACTGGACTGACATATTCTCCAGCCATTG
AATCATTTATCTTCAGCTTGTTCCTGTCTATATATTTTGTTACCATCTTTGGAAACATTCTCATTATCTT
GGCTGTAAGATTGGATTATCACCTCCATACACCCATGTACTTTTTTATTGCCAATCTGTCCTTTACTGAC
ATCTGTATAAGTACAACAATAATCCCAAAGATGCTGTTGAACATTGAAACACAGAATCAGAGCATTACCT
ATACAGGCTGCCTGTCCCAGGTGTGTTTTGTATTGATTTTTGGTGGCTTAGAAAGTTGTCTACTTGCTGT
GATGGCCTATGACCGTTACTTGGCCATAGTTCATCCTCTGAGGTATACAGTTATCATGAATCCTTGTCTC
TGTGTACTGCTCGTTTTACTTTCATTGTTTATCAGTACCATTAATGCACTACTGCATAGTCTGATGTTGT
TAAAACTGTCTTTCTGCAAAGACCAGAATATCCTTCATTTCTTCTGTGAACTTGTTCAAGTCATCAAACA
TGCCTGCTCTGATACTTTCATCAATACCCTTCTTATTTACACAGTGACTAGTGTATTTGCTGGTTTTCCT
CTTGCTGGGATTATTTTCTCTTATATTCAAATTGTGTCCTCCATTCTTAAGATATCATCAGTCCAGGGAC
GGAATAAAGCCTTTTCCACTTGCGGATCTCATCTCTCAGTTGTATCTTTATTCTATGGGACAGCTTTTGG
AGTGTATATGAGTTCTGCAGTTTCTGATTCTTCTGTTAAGAATATAGTCTTTTCTATGATGTATACTGTG
GTCCCTCAAATGCTAAACCCTTTCATATACAGTCTGAGAAACAGAGAAATGAAGCAAGCCATGAGACACC
TTCTCTTTCCTGTGGTCTTATCATCTCCATAA

Translation (313 aa):
MEISNQSGISEFFLTGLTYSPAIESFIFSLFLSIYFVTIFGNILIILAVRLDYHLHTPMYFFIANLSFTD
ICISTTIIPKMLLNIETQNQSITYTGCLSQVCFVLIFGGLESCLLAVMAYDRYLAIVHPLRYTVIMNPCL
CVLLVLLSLFISTINALLHSLMLLKLSFCKDQNILHFFCELVQVIKHACSDTFINTLLIYTVTSVFAGFP
LAGIIFSYIQIVSSILKISSVQGRNKAFSTCGSHLSVVSLFYGTAFGVYMSSAVSDSSVKNIVFSMMYTV
VPQMLNPFIYSLRNREMKQAMRHLLFPVVLSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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