NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22939.1 Public Mus musculus 9 Jam3 23 108 98 CCDS HistoryNCBI Gene:83964Re-query CCDS DB by CCDS ID:22939.1Re-query CCDS DB by GeneID:83964See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034472.15 ENSMUSP00000034472.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034472.15Link to Ensembl Protein Viewer:ENSMUSP00000034472.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034472Re-query CCDS DB by Protein ID:ENSMUSP00000034472
Original member Current member NCBI NM_023277.4 NP_075766.1 Accepted alive Link to Nucleotide Sequence:NM_023277.4Link to Protein Sequence:NP_075766.1Re-query CCDS DB by Nucleotide ID:NM_023277Re-query CCDS DB by Protein ID:NP_075766Link to BLAST:NP_075766.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075766.1 310 Q9D8B7 310 100% 0 0

Chromosomal Locations for CCDS 22939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27098366 27098401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27098712 27098766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27098845 27098974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27100083 27100182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27101238 27101440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27101864 27102016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27105507 27105620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27106349 27106414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27155291 27155366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCGCTGAGCCGGCGGCTGCGACTTCGACTGTACGCGCGGCTGCCTGACTTCTTCCTGCTGCTGCTCT
TCAGGGGCTGCATGATAGAGGCAGTGAATCTCAAATCCAGCAACCGAAACCCAGTGGTACATGAATTTGA
AAGTGTGGAATTGTCTTGCATCATTACGGACTCACAGACAAGTGACCCTAGGATTGAATGGAAGAAAATC
CAAGATGGCCAAACCACATATGTGTATTTTGACAACAAGATTCAAGGAGACCTGGCAGGTCGCACAGATG
TGTTTGGAAAAACTTCCCTGAGGATCTGGAATGTGACACGATCGGATTCAGCCATCTATCGCTGTGAGGT
CGTTGCTCTAAATGACCGAAAAGAAGTTGATGAGATTACCATTGAGTTAATTGTGCAAGTGAAGCCAGTG
ACCCCTGTCTGCAGAATTCCAGCCGCTGTACCTGTAGGCAAGACGGCAACACTGCAGTGCCAAGAGAGCG
AGGGCTATCCCCGGCCTCACTACAGCTGGTACCGCAATGATGTGCCACTGCCTACAGATTCCAGAGCCAA
TCCCAGGTTCCAGAATTCCTCTTTCCATGTGAACTCGGAGACAGGCACTCTGGTTTTCAATGCTGTCCAC
AAGGACGACTCTGGGCAGTACTACTGCATTGCTTCCAATGACGCAGGTGCAGCCAGGTGTGAGGGGCAGG
ACATGGAAGTCTATGATTTGAACATTGCTGGGATTATTGGGGGAGTCCTTGTTGTCCTTATTGTTCTTGC
TGTGATTACGATGGGCATCTGCTGTGCGTACAGACGAGGCTGCTTCATCAGCAGTAAACAAGATGGAGAA
AGCTATAAGAGCCCAGGGAAGCATGACGGTGTTAACTACATCCGGACGAGTGAGGAGGGTGACTTCAGAC
ACAAATCGTCCTTTGTTATCTGA

Translation (310 aa):
MALSRRLRLRLYARLPDFFLLLLFRGCMIEAVNLKSSNRNPVVHEFESVELSCIITDSQTSDPRIEWKKI
QDGQTTYVYFDNKIQGDLAGRTDVFGKTSLRIWNVTRSDSAIYRCEVVALNDRKEVDEITIELIVQVKPV
TPVCRIPAAVPVGKTATLQCQESEGYPRPHYSWYRNDVPLPTDSRANPRFQNSSFHVNSETGTLVFNAVH
KDDSGQYYCIASNDAGAARCEGQDMEVYDLNIAGIIGGVLVVLIVLAVITMGICCAYRRGCFISSKQDGE
SYKSPGKHDGVNYIRTSEEGDFRHKSSFVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH