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Report for CCDS22954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22954.1 Public Mus musculus 9 Ets1 23 108 98 CCDS HistoryNCBI Gene:23871Re-query CCDS DB by CCDS ID:22954.1Re-query CCDS DB by GeneID:23871See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034534.12 ENSMUSP00000034534.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034534.12Link to Ensembl Protein Viewer:ENSMUSP00000034534.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034534Re-query CCDS DB by Protein ID:ENSMUSP00000034534
Original member NCBI NM_011808.2 NP_035938.2 Updated not alive Link to Nucleotide Sequence:NM_011808.2Link to Protein Sequence:NP_035938.2Re-query CCDS DB by Nucleotide ID:NM_011808Re-query CCDS DB by Protein ID:NP_035938
Current member NCBI NM_011808.3 NP_035938.2 Accepted alive Link to Nucleotide Sequence:NM_011808.3Link to Protein Sequence:NP_035938.2Re-query CCDS DB by Nucleotide ID:NM_011808Re-query CCDS DB by Protein ID:NP_035938Link to BLAST:NP_035938.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035938.2 440 P27577-1 440 100% 0 0

Chromosomal Locations for CCDS 22954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32696384 32696465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32728675 32728794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32730055 32730255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32732949 32733026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32733940 32734188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32738099 32738359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32752799 32752917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32754213 32754425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGAAGGCGGCCGTCGATCTCAAGCCGACTCTCACCATCATCAAGACAGAAAAAGTGGATCTCGAGCTTT
TCCCTTCCCCGGACATGGAATGTGCAGATGTCCCGCTGTTAACTCCGAGCAGCAAAGAAATGATGTCCCA
AGCCTTGAAAGCTACTTTCAGTGGTTTCACAAAAGAACAGCAGCGACTGGGAATCCCCAAAGACCCCCGG
CAGTGGACAGAAACCCACGTCCGGGACTGGGTGATGTGGGCTGTGAATGAGTTCAGCCTGAAAGGTGTGG
ACTTCCAGAAGTTCTGTATGAGTGGAGCAGCACTGTGTGCCCTGGGTAAAGAATGCTTCCTCGAGCTGGC
TCCAGACTTTGTTGGGGATATCCTGTGGGAGCATCTAGAGATCCTGCAGAAAGAGGATGTGAAACCATAT
CAGGTTAATGGAGCCAACCCTACCTACCCAGAATCCTGTTACACCTCGGATTACTTCATCAGCTACGGTA
TCGAGCATGCTCAGTGTGTTCCTCCCTCAGAGTTCTCAGAGCCCAGCTTCATCACAGAGTCCTATCAGAC
GCTGCATCCTATCAGCTCGGAAGAACTCCTGTCCCTCAAGTATGAGAACGACTACCCTTCTGTCATTCTC
CAGGACCCTCTCCAGACAGACACCTTGCAGACAGACTACTTTGCCATCAAGCAAGAGGTGTTAACTCCAG
ACAACATGTGCCTGGGGAGAGCCAGTCGTGGTAAACTCGGGGGCCAGGACTCTTTTGAGAGCGTAGAGAG
CTACGATAGTTGTGACCGCCTCACCCAGTCCTGGAGCAGCCAGTCATCCTTCAACAGCCTGCAGCGGGTC
CCCTCCTATGACAGCTTCGACTACGAGGATTATCCCGCTGCCCTGCCCAACCACAAGCCCAAGGGCACCT
TCAAGGACTATGTGCGTGACCGTGCTGACCTCAACAAGGACAAGCCTGTCATTCCTGCTGCTGCCCTGGC
TGGCTACACAGGAAGTGGGCCGATCCAGCTGTGGCAGTTTCTTCTGGAATTACTCACTGATAAGTCTTGT
CAGTCCTTTATCAGCTGGACAGGAGATGGCTGGGAATTCAAGCTTTCTGACCCAGATGAGGTGGCCAGGA
GATGGGGAAAGAGGAAAAACAAACCTAAGATGAATTATGAGAAACTGAGCCGTGGCCTTCGCTACTATTA
TGACAAAAATATCATCCACAAGACGGCGGGCAAGCGCTACGTATACCGCTTTGTGTGCGACCTGCAGAGC
CTGCTGGGATACACCCCTGAAGAGCTGCACGCCATGCTGGATGTAAAGCCGGATGCTGACTAG

Translation (440 aa):
MKAAVDLKPTLTIIKTEKVDLELFPSPDMECADVPLLTPSSKEMMSQALKATFSGFTKEQQRLGIPKDPR
QWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDILWEHLEILQKEDVKPY
QVNGANPTYPESCYTSDYFISYGIEHAQCVPPSEFSEPSFITESYQTLHPISSEELLSLKYENDYPSVIL
QDPLQTDTLQTDYFAIKQEVLTPDNMCLGRASRGKLGGQDSFESVESYDSCDRLTQSWSSQSSFNSLQRV
PSYDSFDYEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSC
QSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQS
LLGYTPEELHAMLDVKPDAD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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