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Report for CCDS23117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23117.1 Public Mus musculus 9 Treh 23 108 98 CCDS HistoryNCBI Gene:58866Re-query CCDS DB by CCDS ID:23117.1Re-query CCDS DB by GeneID:58866See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034609.10 ENSMUSP00000034609.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034609.10Link to Ensembl Protein Viewer:ENSMUSP00000034609.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034609Re-query CCDS DB by Protein ID:ENSMUSP00000034609
Original member Current member NCBI NM_021481.3 NP_067456.1 Accepted alive Link to Nucleotide Sequence:NM_021481.3Link to Protein Sequence:NP_067456.1Re-query CCDS DB by Nucleotide ID:NM_021481Re-query CCDS DB by Protein ID:NP_067456Link to BLAST:NP_067456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067456.1 576 Q9JLT2 576 100% 0 0

Chromosomal Locations for CCDS 23117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44673261 44673340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681060 44681160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681281 44681425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681506 44681593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44682632 44682732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44682869 44682961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683049 44683165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683253 44683375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683572 44683621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683765 44683959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44684508 44684725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44684935 44685046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685269 44685381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685627 44685680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685876 44686016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGACCTGGGAGCTGCACCTGCTGCTTCTGCTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCAC
CCTGTGAGAGCCAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGA
TGACAAGCAGTTTGTGGATATGTCACTGGCCACATCTCCAGATGAAGTCCTGCAGAAGTTCAGTGAGCTG
GCCACAGTCCACAACCACAGCATCCCCAAGGAACAGCTTCAGGAATTTGTCCAGAGTCACTTCCAGCCCG
TGGGGCAGGAGCTGCAGTCCTGGACCCCTGAGGACTGGAAGGACAGCCCTCAGTTCCTGCAGAAGATCTC
GGATGCTAATCTGCGTGTCTGGGCGGAGGAGCTACACAAGATCTGGAAAAAGCTGGGAAAGAAGATGAAA
GCAGAAGTCCTCAGCTACCCCGAGAGGTCCTCCCTAATCTACTCAAAGCACCCCTTCATTGTGCCCGGGG
GGCGCTTTGTTGAATTCTACTACTGGGACTCGTACTGGGTGATGGAAGGCCTGCTTCTTTCTGAGATGGC
CTCAACAGTGAAGGGTATGCTGCAAAACTTTCTGGATCTGGTGAAGACCTACGGACATATCCCCAACGGT
GGACGCATATATTACCTGCAACGGAGCCAGCCCCCACTCCTGACTCTCATGATGGATCGATATGTAGCTC
ATACCAAGGATGTCGCCTTCCTTCAGGAGAATATTGGGACTCTAGCCTCTGAACTGGACTTCTGGACTGT
GAACAGGACTGTCTCTGTAGTCTCAGGAGGACAAAGCTATGTCTTAAATCGCTACTATGTCCCTTATGGG
GGACCCAGGCCAGAGTCCTACAGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAAGGGGACCGAGAGA
CTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGAGG
CCCAGACCCTGATTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATCTGAACGCGTTCCTG
TGCCAAGCAGAGGAACTGATGAGTAACTTCTACTCCAGACTAGGGAACGACACAGAGGCCACAAAGTACA
GGAACCTGCGGGCCCAGCGCTTGGCCGCCATGGAAGCTGTCCTGTGGGACGAGCAGAAGGGTGCCTGGTT
TGACTATGACTTGGAAAAGGGGAAGAAGAACCTGGAGTTTTATCCCTCCAACCTCTCCCCACTTTGGGCT
GGCTGCTTCTCAGACCCTAGTGTTGCTGACAAGGCTCTGAAGTACTTGGAGGACAGCAAGATCTTGACCT
ACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCCCCAATGCCTGGGCCCC
ACTGCAGGACCTGGTCATTAGAGGTTTGGCCAAGTCAGCTTCCCCCCGGACTCAGGAGGTGGCTTTCCAG
CTGGCCCAGAATTGGATCAAAACCAACTTCAAAGTCTACTCCCAAAAGTCAGCGATGTTTGAGAAGTATG
ACATCAGCAACGGTGGACATCCAGGTGGAGGAGGGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAA
CGGATTGGCCCTGATGCTTCTGGATCGCTATGGTGACCAGTTGACTTCAGGGACCCAGTTAGCTTCCCTG
GGACCCCACTGCCTAGTGGCTGCCCTTCTTCTCAGTCTTCTGCTACAGTGA

Translation (576 aa):
MTWELHLLLLLGLGLRSQEALPPPCESQIYCHGELLHQVQMAQLYQDDKQFVDMSLATSPDEVLQKFSEL
ATVHNHSIPKEQLQEFVQSHFQPVGQELQSWTPEDWKDSPQFLQKISDANLRVWAEELHKIWKKLGKKMK
AEVLSYPERSSLIYSKHPFIVPGGRFVEFYYWDSYWVMEGLLLSEMASTVKGMLQNFLDLVKTYGHIPNG
GRIYYLQRSQPPLLTLMMDRYVAHTKDVAFLQENIGTLASELDFWTVNRTVSVVSGGQSYVLNRYYVPYG
GPRPESYRKDAELANSVPEGDRETLWAELKAGAESGWDFSSRWLVGGPDPDLLSSIRTSKMVPADLNAFL
CQAEELMSNFYSRLGNDTEATKYRNLRAQRLAAMEAVLWDEQKGAWFDYDLEKGKKNLEFYPSNLSPLWA
GCFSDPSVADKALKYLEDSKILTYQYGIPTSLRNTGQQWDFPNAWAPLQDLVIRGLAKSASPRTQEVAFQ
LAQNWIKTNFKVYSQKSAMFEKYDISNGGHPGGGGEYEVQEGFGWTNGLALMLLDRYGDQLTSGTQLASL
GPHCLVAALLLSLLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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