NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2323.1 Public Homo sapiens 2 RFTN2 24 110 108 CCDS HistoryNCBI Gene:130132Re-query CCDS DB by CCDS ID:2323.1Re-query CCDS DB by GeneID:130132See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295049.9 ENSP00000295049.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295049.9Link to Ensembl Protein Viewer:ENSP00000295049.3Re-query CCDS DB by Nucleotide ID:ENST00000295049Re-query CCDS DB by Protein ID:ENSP00000295049
Original member Current member NCBI NM_144629.3 NP_653230.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144629.3Link to Protein Sequence:NP_653230.2Re-query CCDS DB by Nucleotide ID:NM_144629Re-query CCDS DB by Protein ID:NP_653230Link to BLAST:NP_653230.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653230.2 501 Q52LD8 501 100% 0 0

Chromosomal Locations for CCDS 2323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 197572008 197572280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197595991 197596069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197615876 197615979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197617800 197617921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197631011 197631220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197633718 197633997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197644158 197644272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197646483 197646666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197675320 197675458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGGGTGCGGACTTAGAAAGCTAGAAGACCCTGATGATAGCAGCCCTGGAAAAATATTTTCTACCCTGA
AGAGACCGCAAGTGGAAACAAAGACAGAATTTGCTTACGAATATGTATTGCTGGATTTTACTCTACAAGC
TTCATCAAACCCAGAAGTCATCAAGATAAATTCAATTCTGGATATAGTAACAAAAGTGGAAAACTATTAT
CTTAAAGGATATATTGTCGGGGCTATTCATCCTGTTATACAACCTGTGGGGCAGCGAAAACACCTACCTG
CAAGTTACCTATACAGAGTGGTGCTATTGCGCTTGAAATTAAGCCCAAAGAATTCGGCAGCACCCAGTGG
ACAAAGACGCCCAAGGCTCGTGATTGAGGAATGTCCCCTAACTTCTGAGGCACAAACAAATGACGCAGCA
AAAGAACTGATAGAAAAGATTAATGTCGCTGCTAAAAGAGGAATGAAATTTGTTGGATTCATATCACAGC
ATTATTCTCCATCTAAATTCTGCAATGGAACCAACCATGATGGAGATATAGAATCGATGCTACATGTGAG
ACACGGTTCAGATGAAAACTGTAGAAGTTGGAATGAAGGGACGTTAAGTGGGCAGTCATCTGAAAGCGGA
ATTGAGGAAGAACTTCATCATGAAAGTGGACAGTATCAAATGGAACAAAATGGCAGCCCTACTTCCTCTA
AATCAAGAAAGGGAGAAGCCTCAGATAACAAATTGTATACAGTCTTCAATGCTTTTGATGATGATTCAAC
CTCCTGGGCCTATCAGGAAGGCATCCTGTCAATGAAAGTAACAAGAAAAGGATCAGTCATTAGTACACTT
GATGCTGATTGGCTGGAGTTAACTACCTTTTATTATAAACAAGGCTTGTCTTTAATTGATTCTTTTGTAT
TCTGGGAAACATCTAAAGGGGAACATTTGCCTAAATCTTTGGAAGGATTTTTTATCTATGAAGAAGAAGG
TTCTGGAGTTCCAGGTTCTAGTAGGAAAGGAAATGATGCCATCGTAGTAGAACAATGGACTGTTATTGAG
GGATGTGAAATCAAAACAGATTATGGCCCTCTGCTGCACACTCTGGCTGAATTCGGATGGCTTCTGACAA
GCGTGTTGCCCACACCTGTATTGAGACATGACAGTGAAGGGAATTTGGCTACAAAGCAGATCGTATTCCT
TCAGAGGCCAGTTATGTGGAATTCAGCTGCTCAAACACCAGATAAGAAAGCCAGCCGCCACATAAAAGGT
GAAGACAAGAATAAAGCCACTAGTAGAAGCATCGGATTAGACACAACCTCGTCACAACCTGCAGAGAGCA
GACACCTGCCTGAGGAGTGCCGCCTTTCTCCCTCCCGGGAATGCTGGACAAAGGAGGGAAGGCTGGCACA
GCACAACAGCTTCTCTGGGTTCAGCAGCAGTGACAACGTCCTCCGGGAATTAGACGACGGACAGTTTGAT
CAGGAAGATGGAGTGACTCAGGTCACTTGTATGTGA

Translation (501 aa):
MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQASSNPEVIKINSILDIVTKVENYY
LKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSGQRRPRLVIEECPLTSEAQTNDAA
KELIEKINVAAKRGMKFVGFISQHYSPSKFCNGTNHDGDIESMLHVRHGSDENCRSWNEGTLSGQSSESG
IEEELHHESGQYQMEQNGSPTSSKSRKGEASDNKLYTVFNAFDDDSTSWAYQEGILSMKVTRKGSVISTL
DADWLELTTFYYKQGLSLIDSFVFWETSKGEHLPKSLEGFFIYEEEGSGVPGSSRKGNDAIVVEQWTVIE
GCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHDSEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKG
EDKNKATSRSIGLDTTSSQPAESRHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNVLRELDDGQFD
QEDGVTQVTCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH